HiddenMarkovModel
=================

.. currentmodule:: pyopenms

.. autoclass:: HiddenMarkovModel
   :members:
   :undoc-members:
   :show-inheritance:
   :inherited-members:
   
   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~HiddenMarkovModel.__init__
      ~HiddenMarkovModel.addNewState
      ~HiddenMarkovModel.addSynonymTransition
      ~HiddenMarkovModel.clear
      ~HiddenMarkovModel.clearInitialTransitionProbabilities
      ~HiddenMarkovModel.clearTrainingEmissionProbabilities
      ~HiddenMarkovModel.disableTransition
      ~HiddenMarkovModel.disableTransitions
      ~HiddenMarkovModel.dump
      ~HiddenMarkovModel.enableTransition
      ~HiddenMarkovModel.estimateUntrainedTransitions
      ~HiddenMarkovModel.evaluate
      ~HiddenMarkovModel.forwardDump
      ~HiddenMarkovModel.getNumberOfStates
      ~HiddenMarkovModel.getPseudoCounts
      ~HiddenMarkovModel.getState
      ~HiddenMarkovModel.getTransitionProbability
      ~HiddenMarkovModel.setInitialTransitionProbability
      ~HiddenMarkovModel.setPseudoCounts
      ~HiddenMarkovModel.setTrainingEmissionProbability
      ~HiddenMarkovModel.setTransitionProbability
      ~HiddenMarkovModel.setVariableModifications
      ~HiddenMarkovModel.train
      ~HiddenMarkovModel.writeGraphMLFile