OpenSwath\_Scores
=================

.. currentmodule:: pyopenms

.. autoclass:: OpenSwath_Scores
   :members:
   :undoc-members:
   :show-inheritance:
   :inherited-members:
   
   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~OpenSwath_Scores.__init__
      ~OpenSwath_Scores.calculate_lda_prescore
      ~OpenSwath_Scores.calculate_swath_lda_prescore
      ~OpenSwath_Scores.get_quick_lda_score
   
   

   
   
   .. rubric:: Attributes

   .. autosummary::
   
      ~OpenSwath_Scores.bseries_score
      ~OpenSwath_Scores.dotprod_score_dia
      ~OpenSwath_Scores.elution_model_fit_score
      ~OpenSwath_Scores.intensity
      ~OpenSwath_Scores.isotope_correlation
      ~OpenSwath_Scores.isotope_overlap
      ~OpenSwath_Scores.library_corr
      ~OpenSwath_Scores.library_dotprod
      ~OpenSwath_Scores.library_manhattan
      ~OpenSwath_Scores.library_norm_manhattan
      ~OpenSwath_Scores.library_rootmeansquare
      ~OpenSwath_Scores.library_sangle
      ~OpenSwath_Scores.log_sn_score
      ~OpenSwath_Scores.manhatt_score_dia
      ~OpenSwath_Scores.massdev_score
      ~OpenSwath_Scores.mi_score
      ~OpenSwath_Scores.ms1_isotope_correlation
      ~OpenSwath_Scores.ms1_isotope_overlap
      ~OpenSwath_Scores.ms1_mi_combined_score
      ~OpenSwath_Scores.ms1_mi_contrast_score
      ~OpenSwath_Scores.ms1_mi_score
      ~OpenSwath_Scores.ms1_ppm_score
      ~OpenSwath_Scores.ms1_xcorr_coelution_combined_score
      ~OpenSwath_Scores.ms1_xcorr_coelution_contrast_score
      ~OpenSwath_Scores.ms1_xcorr_coelution_score
      ~OpenSwath_Scores.ms1_xcorr_shape_combined_score
      ~OpenSwath_Scores.ms1_xcorr_shape_contrast_score
      ~OpenSwath_Scores.ms1_xcorr_shape_score
      ~OpenSwath_Scores.norm_rt_score
      ~OpenSwath_Scores.normalized_experimental_rt
      ~OpenSwath_Scores.nr_peaks
      ~OpenSwath_Scores.raw_rt_score
      ~OpenSwath_Scores.rt_difference
      ~OpenSwath_Scores.sn_ratio
      ~OpenSwath_Scores.sonar_diff
      ~OpenSwath_Scores.sonar_lag
      ~OpenSwath_Scores.sonar_rsq
      ~OpenSwath_Scores.sonar_shape
      ~OpenSwath_Scores.sonar_sn
      ~OpenSwath_Scores.sonar_trend
      ~OpenSwath_Scores.total_xic
      ~OpenSwath_Scores.weighted_coelution_score
      ~OpenSwath_Scores.weighted_massdev_score
      ~OpenSwath_Scores.weighted_mi_score
      ~OpenSwath_Scores.weighted_xcorr_shape
      ~OpenSwath_Scores.xcorr_coelution_score
      ~OpenSwath_Scores.xcorr_shape_score
      ~OpenSwath_Scores.yseries_score