SequestInfile
=============

.. currentmodule:: pyopenms

.. autoclass:: SequestInfile
   :members:
   :undoc-members:
   :show-inheritance:
   :inherited-members:
   
   
   .. automethod:: __init__

   
   .. rubric:: Methods

   .. autosummary::
   
      ~SequestInfile.__init__
      ~SequestInfile.addEnzymeInfo
      ~SequestInfile.getDatabase
      ~SequestInfile.getEnzymeInfoAsString
      ~SequestInfile.getEnzymeName
      ~SequestInfile.getEnzymeNumber
      ~SequestInfile.getIonCutoffPercentage
      ~SequestInfile.getIonSeriesWeights
      ~SequestInfile.getMassTypeFragment
      ~SequestInfile.getMassTypeParent
      ~SequestInfile.getMatchPeakAllowedError
      ~SequestInfile.getMatchPeakCount
      ~SequestInfile.getMatchPeakTolerance
      ~SequestInfile.getMaxAAPerModPerPeptide
      ~SequestInfile.getMaxInternalCleavageSites
      ~SequestInfile.getMaxModsPerPeptide
      ~SequestInfile.getModifications
      ~SequestInfile.getNeutralLossesForIons
      ~SequestInfile.getNormalizeXcorr
      ~SequestInfile.getNucleotideReadingFrame
      ~SequestInfile.getOutputLines
      ~SequestInfile.getPartialSequence
      ~SequestInfile.getPeakMassTolerance
      ~SequestInfile.getPeptideMassUnit
      ~SequestInfile.getPrecursorMassTolerance
      ~SequestInfile.getPrintDuplicateReferences
      ~SequestInfile.getProteinMassFilter
      ~SequestInfile.getRemovePrecursorNearPeaks
      ~SequestInfile.getResiduesInUpperCase
      ~SequestInfile.getSequenceHeaderFilter
      ~SequestInfile.getShowFragmentIons
      ~SequestInfile.handlePTMs
      ~SequestInfile.setDatabase
      ~SequestInfile.setEnzyme
      ~SequestInfile.setIonCutoffPercentage
      ~SequestInfile.setIonSeriesWeights
      ~SequestInfile.setMassTypeFragment
      ~SequestInfile.setMassTypeParent
      ~SequestInfile.setMatchPeakAllowedError
      ~SequestInfile.setMatchPeakCount
      ~SequestInfile.setMatchPeakTolerance
      ~SequestInfile.setMaxAAPerModPerPeptide
      ~SequestInfile.setMaxInternalCleavageSites
      ~SequestInfile.setMaxModsPerPeptide
      ~SequestInfile.setNeutralLossesForIons
      ~SequestInfile.setNormalizeXcorr
      ~SequestInfile.setNucleotideReadingFrame
      ~SequestInfile.setOutputLines
      ~SequestInfile.setPartialSequence
      ~SequestInfile.setPeakMassTolerance
      ~SequestInfile.setPeptideMassUnit
      ~SequestInfile.setPrecursorMassTolerance
      ~SequestInfile.setPrintDuplicateReferences
      ~SequestInfile.setProteinMassFilter
      ~SequestInfile.setRemovePrecursorNearPeaks
      ~SequestInfile.setResiduesInUpperCase
      ~SequestInfile.setSequenceHeaderFilter
      ~SequestInfile.setShowFragmentIons
      ~SequestInfile.store