ProteinResolver#

class pyopenms.ProteinResolver#

Bases: object

Cython implementation of _ProteinResolver

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()#

Overload:

__init__(self) None

Overload:

__init__(self, in_0: ProteinResolver) None

Methods

__init__

Overload:

clearResult(self)

countTargetDecoy

Overload:

getDefaults(self)

Returns the default parameters

getName(self)

Returns the name

getParameters(self)

Returns the parameters

getPeptideHit

Overload:

getPeptideIdentification

Overload:

getResults(self)

getSubsections(self)

resolveConsensus(self, consensus)

resolveID(self, peptide_identifications)

setName(self, in_0)

Sets the name

setParameters(self, param)

Sets the parameters

setProteinData(self, protein_data)

clearResult(self) None#
countTargetDecoy()#

Overload:

countTargetDecoy(self, msd_groups: List[MSDGroup], consensus: ConsensusMap) None

Overload:

countTargetDecoy(self, msd_groups: List[MSDGroup], peptide_nodes: List[PeptideIdentification]) None
getDefaults(self) Param#

Returns the default parameters

getName(self) bytes | str | String#

Returns the name

getParameters(self) Param#

Returns the parameters

getPeptideHit()#

Overload:

getPeptideHit(self, consensus: ConsensusMap, peptide: PeptideEntry) PeptideHit

Overload:

getPeptideHit(self, peptide_nodes: List[PeptideIdentification], peptide: PeptideEntry) PeptideHit
getPeptideIdentification()#

Overload:

getPeptideIdentification(self, consensus: ConsensusMap, peptide: PeptideEntry) PeptideIdentification

Overload:

getPeptideIdentification(self, peptide_nodes: List[PeptideIdentification], peptide: PeptideEntry) PeptideIdentification
getResults(self) List[ResolverResult]#
getSubsections(self) List[bytes]#
resolveConsensus(self, consensus: ConsensusMap) None#
resolveID(self, peptide_identifications: List[PeptideIdentification]) None#
setName(self, in_0: bytes | str | String) None#

Sets the name

setParameters(self, param: Param) None#

Sets the parameters

setProteinData(self, protein_data: List[FASTAEntry]) None#