FalseDiscoveryRate#
- class pyopenms.FalseDiscoveryRate#
Bases:
object
Cython implementation of _FalseDiscoveryRate
- Original C++ documentation is available here
– Inherits from [‘DefaultParamHandler’]
- __init__(self) None #
Methods
__init__
(self)Overload:
Overload:
applyEstimated
(self, ids)Overload:
applyPickedProteinFDR
(self, id, ...)getDefaults
(self)Returns the default parameters
getName
(self)Returns the name
getParameters
(self)Returns the parameters
getSubsections
(self)Overload:
setName
(self, in_0)Sets the name
setParameters
(self, param)Sets the parameters
- apply()#
Overload:
- apply(self, forward_ids: List[PeptideIdentification], reverse_ids: List[PeptideIdentification]) None
Overload:
- apply(self, id: List[PeptideIdentification]) None
Overload:
- apply(self, forward_ids: List[ProteinIdentification], reverse_ids: List[ProteinIdentification]) None
Overload:
- apply(self, id: List[ProteinIdentification]) None
- applyBasic()#
Overload:
- applyBasic(self, run_info: List[ProteinIdentification], ids: List[PeptideIdentification]) None
Overload:
- applyBasic(self, ids: List[PeptideIdentification], higher_score_better: bool, charge: int, identifier: bytes | str | String, only_best_per_pep: bool) None
Overload:
- applyBasic(self, cmap: ConsensusMap, use_unassigned_peptides: bool) None
Overload:
- applyBasic(self, id: ProteinIdentification, groups_too: bool) None
- applyEstimated(self, ids: List[ProteinIdentification]) None #
- applyEvaluateProteinIDs()#
Overload:
- applyEvaluateProteinIDs(self, ids: List[ProteinIdentification], pepCutoff: float, fpCutoff: int, diffWeight: float) float
Overload:
- applyEvaluateProteinIDs(self, ids: ProteinIdentification, pepCutoff: float, fpCutoff: int, diffWeight: float) float
- applyPickedProteinFDR(self, id: ProteinIdentification, decoy_string: String, decoy_prefix: bool, groups_too: bool) None #
- getSubsections(self) List[bytes] #
- rocN()#
Overload:
- rocN(self, ids: List[PeptideIdentification], fp_cutoff: int) float
Overload:
- rocN(self, ids: ConsensusMap, fp_cutoff: int, include_unassigned_peptides: bool) float
Overload:
- rocN(self, ids: ConsensusMap, fp_cutoff: int, identifier: bytes | str | String, include_unassigned_peptides: bool) float