PeptideEvidence#

class pyopenms.PeptideEvidence#

Bases: object

Cython implementation of _PeptideEvidence

Original C++ documentation is available here

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: PeptideEvidence) → None

Methods

`__init__`	Overload:
`getAAAfter`(self)	Returns the amino acid single letter code after the sequence (subsequent amino acid in the protein).
`getAABefore`(self)	Returns the amino acid single letter code before the sequence (preceding amino acid in the protein).
`getEnd`(self)	Returns the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus).
`getProteinAccession`(self)	Returns the protein accession the peptide matches to.
`getStart`(self)	Returns the position in the protein (starting at 0 for the N-terminus).
`hasValidLimits`(self)	Start and end numbers in evidence represent actual numeric indices
`setAAAfter`(self, rhs)	Sets the amino acid single letter code after the sequence (subsequent amino acid in the protein).
`setAABefore`(self, rhs)	Sets the amino acid single letter code before the sequence (preceding amino acid in the protein).
`setEnd`(self, end)	Sets the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus).
`setProteinAccession`(self, s)	Sets the protein accession the peptide matches to.
`setStart`(self, start)	Sets the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus).

getAAAfter(self) → bytes#: Returns the amino acid single letter code after the sequence (subsequent amino acid in the protein). If not available, UNKNOWN_AA is returned. If C-terminal, C_TERMINAL_AA is returned

getAABefore(self) → bytes#: Returns the amino acid single letter code before the sequence (preceding amino acid in the protein). If not available, UNKNOWN_AA is returned. If N-terminal, N_TERMINAL_AA is returned

getEnd(self) → int#: Returns the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus). If not available UNKNOWN_POSITION constant is returned

getProteinAccession(self) → bytes | str | String#: Returns the protein accession the peptide matches to. If not available the empty string is returned

getStart(self) → int#: Returns the position in the protein (starting at 0 for the N-terminus). If not available UNKNOWN_POSITION constant is returned

hasValidLimits(self) → bool#: Start and end numbers in evidence represent actual numeric indices

setAAAfter(self, rhs: bytes) → None#: Sets the amino acid single letter code after the sequence (subsequent amino acid in the protein). If not available, set to UNKNOWN_AA. If C-terminal set to C_TERMINAL_AA

setAABefore(self, rhs: bytes) → None#: Sets the amino acid single letter code before the sequence (preceding amino acid in the protein). If not available, set to UNKNOWN_AA. If N-terminal set to N_TERMINAL_AA

setEnd(self, end: int) → None#: Sets the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus). If not available, set UNKNOWN_POSITION. C-terminal positions must be marked with C_TERMINAL_AA

setProteinAccession(self, s: bytes | str | String) → None#: Sets the protein accession the peptide matches to. If not available set to empty string

setStart(self, start: int) → None#: Sets the position of the last AA of the peptide in protein coordinates (starting at 0 for the N-terminus). If not available, set to UNKNOWN_POSITION. N-terminal positions must be marked with N_TERMINAL_AA