SeedListGenerator#
- class pyopenms.SeedListGenerator#
Bases:
object
Cython implementation of _SeedListGenerator
Original C++ documentation is available here
- __init__()#
Overload:
- __init__(self) None
Overload:
- __init__(self, in_0: SeedListGenerator) None
Methods
Overload:
Overload:
Overload:
- convertSeedList()#
Overload:
- convertSeedList(self, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]', features: FeatureMap) None
Converts a list of seed positions to a feature map (expected format for FeatureFinder)
Overload:
- convertSeedList(self, features: FeatureMap, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]') None
Converts a feature map with seed positions back to a simple list
- generateSeedList()#
Overload:
- generateSeedList(self, exp: MSExperiment, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]') None
Generate a seed list based on an MS experiment
Overload:
- generateSeedList(self, peptides: List[PeptideIdentification], seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]', use_peptide_mass: bool) None
Generates a seed list based on a list of peptide identifications