SeedListGenerator

class pyopenms.SeedListGenerator

Bases: object

Cython implementation of _SeedListGenerator

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: SeedListGenerator) → None

Methods

__init__	Overload:
convertSeedList	Overload:
generateSeedList	Overload:

convertSeedList()

Overload:

convertSeedList(self, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]', features: FeatureMap) → None

Converts a list of seed positions to a feature map (expected format for FeatureFinder)

Overload:

convertSeedList(self, features: FeatureMap, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]') → None

Converts a feature map with seed positions back to a simple list

generateSeedList()

Overload:

generateSeedList(self, exp: MSExperiment, seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]') → None

Generate a seed list based on an MS experiment

Overload:

generateSeedList(self, peptides: List[PeptideIdentification], seeds: '_np.ndarray[Any, _np.dtype[_np.float32]]', use_peptide_mass: bool) → None

Generates a seed list based on a list of peptide identifications