SqMassFile#

class pyopenms.SqMassFile#

Bases: object

Cython implementation of _SqMassFile

Original C++ documentation is available here

An class that uses on-disk SQLite database to read and write spectra and chromatograms

This class provides functions to read and write spectra and chromatograms to disk using a SQLite database and store them in sqMass format. This allows users to access, select and filter spectra and chromatograms on-demand even in a large collection of data

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: SqMassFile) → None

Methods

`__init__`	Overload:
`load`(self, filename, map_)	Read / Write a complete mass spectrometric experiment
`setConfig`(self, config)
`store`(self, filename, map_)	Store an MSExperiment in sqMass format

load(self, filename: bytes | str | String, map_: MSExperiment) → None#: Read / Write a complete mass spectrometric experiment

setConfig(self, config: SqMassConfig) → None#

store(self, filename: bytes | str | String, map_: MSExperiment) → None#: Store an MSExperiment in sqMass format