ChromatogramExtractor

class pyopenms.ChromatogramExtractor

Bases: object

Cython implementation of _ChromatogramExtractor

Original C++ documentation is available here

– Inherits from [‘ProgressLogger’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: ChromatogramExtractor) → None

Methods

__init__	Overload:
endProgress(self)	Ends the progress display
extractChromatograms(self, input, output, ...)
getLogType(self)	Returns the type of progress log being used
nextProgress(self)	Increment progress by 1 (according to range begin-end)
prepare_coordinates	__static_ChromatogramExtractor_prepare_coordinates(output_chromatograms: List[OSChromatogram] , extraction_coordinates: List[ExtractionCoordinates] , targeted: TargetedExperiment , rt_extraction_window: float , ms1: bool , ms1_isotopes: int ) -> None
setLogType(self, in_0)	Sets the progress log that should be used.
setProgress(self, value)	Sets the current progress
startProgress(self, begin, end, label)

endProgress(self) → None

Ends the progress display

extractChromatograms(self, input: SpectrumAccessOpenMS, output: List[OSChromatogram], extraction_coordinates: List[ExtractionCoordinates], mz_extraction_window: float, ppm: bool, im_extraction_window: float, filter: bytes | str | String) → None

getLogType(self) → int

Returns the type of progress log being used

nextProgress(self) → None

Increment progress by 1 (according to range begin-end)

prepare_coordinates()

__static_ChromatogramExtractor_prepare_coordinates(output_chromatograms: List[OSChromatogram] , extraction_coordinates: List[ExtractionCoordinates] , targeted: TargetedExperiment , rt_extraction_window: float , ms1: bool , ms1_isotopes: int ) -> None

setLogType(self, in_0: int) → None

Sets the progress log that should be used. The default type is NONE!

setProgress(self, value: int) → None

Sets the current progress

startProgress(self, begin: int, end: int, label: bytes | str | String) → None