MRMTransitionGroupCP

class pyopenms.MRMTransitionGroupCP(*args, **kwargs)

Bases: MRMTransitionGroupCP

__init__(*args, **kwargs)

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: MRMTransitionGroupCP) → None

Methods

__init__(*args, **kwargs)	Overload:
addChromatogram(self, chromatogram, key)
addFeature(self, feature)
addPrecursorChromatogram(self, chromatogram, key)
addTransition(self, transition, key)
chromatogramIdsMatch(self)
getBestFeature(self)
getChromatogram(self, key)
getChromatograms(self)
getFeatures(self)
getFeaturesMuteable(self)
getLibraryIntensity(self, result)
getPrecursorChromatogram(self, key)
getPrecursorChromatograms(self)
getTransition(self, key)
getTransitionGroupID(self)
getTransitions(self)
getTransitionsMuteable(self)
get_chromatogram_df([export_meta_values])	Returns a DataFrame representation of the Chromatograms stored in MRMTransitionGroupCP.
get_feature_df([meta_values])	Returns a DataFrame representation of the Features stored in MRMTransitionGroupCP.
hasChromatogram(self, key)
hasPrecursorChromatogram(self, key)
hasTransition(self, key)
isInternallyConsistent(self)
setTransitionGroupID(self, tr_gr_id)
size(self)
subset(self, tr_ids)

addChromatogram(self, chromatogram: MSChromatogram, key: bytes | str | String) → None

addFeature(self, feature: MRMFeature) → None

addPrecursorChromatogram(self, chromatogram: MSChromatogram, key: bytes | str | String) → None

addTransition(self, transition: ReactionMonitoringTransition, key: bytes | str | String) → None

chromatogramIdsMatch(self) → bool

getBestFeature(self) → MRMFeature

getChromatogram(self, key: bytes | str | String) → MSChromatogram

getChromatograms(self) → List[MSChromatogram]

getFeatures(self) → List[MRMFeature]

getFeaturesMuteable(self) → List[MRMFeature]

getLibraryIntensity(self, result: List[float]) → None

getPrecursorChromatogram(self, key: bytes | str | String) → MSChromatogram

getPrecursorChromatograms(self) → List[MSChromatogram]

getTransition(self, key: bytes | str | String) → ReactionMonitoringTransition

getTransitionGroupID(self) → bytes | str | String

getTransitions(self) → List[ReactionMonitoringTransition]

getTransitionsMuteable(self) → List[ReactionMonitoringTransition]

get_chromatogram_df(export_meta_values: bool = True) → DataFrame

Returns a DataFrame representation of the Chromatograms stored in MRMTransitionGroupCP.

rt: The retention time of the transition group. intensity: The intensity of the transition group. precursor_mz: The mass-to-charge ratio of the precursor ion. precursor_charge: The charge of the precursor ion. product_mz: The mass-to-charge ratio of the product ion. product_charge: The charge of the product ion. native_id: The native identifier of the transition group.

Args:

export_meta_values (bool): Whether to export meta values.

Returns:

pd.DataFrame: DataFrame representation of the chromatograms stored in MRMTransitionGroupCP.

get_feature_df(meta_values: None | List[str] | str = None) → DataFrame

Returns a DataFrame representation of the Features stored in MRMTransitionGroupCP.

rt: The retention time of the transition group. intensity: The intensity of the transition group. precursor_mz: The mass-to-charge ratio of the precursor ion. precursor_charge: The charge of the precursor ion. product_mz: The mass-to-charge ratio of the product ion. product_charge: The charge of the product ion. native_id: The native identifier of the transition group.

Args:

export_meta_values (bool): Whether to export meta values.

Returns:

pd.DataFrame: DataFrame representation of the Features stored in MRMTransitionGroupCP.

hasChromatogram(self, key: bytes | str | String) → bool

hasPrecursorChromatogram(self, key: bytes | str | String) → bool

hasTransition(self, key: bytes | str | String) → bool

isInternallyConsistent(self) → bool

setTransitionGroupID(self, tr_gr_id: bytes | str | String) → None

size(self) → int

subset(self, tr_ids: List[bytes | str]) → MRMTransitionGroupCP