SiriusFragmentAnnotation#

class pyopenms.SiriusFragmentAnnotation#

Bases: object

Cython implementation of _SiriusFragmentAnnotation

Original C++ documentation is available here

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: SiriusFragmentAnnotation) → None

Methods

`__init__`	Overload:
`extractAndResolveSiriusAnnotations`(self, ...)
`extractAnnotationsFromSiriusFile`(self, ...)
`extract_columnname_to_columnindex`(self, csvfile)

extractAndResolveSiriusAnnotations(self, sirius_workspace_subdirs: List[bytes], score_threshold: float, use_exact_mass: bool, decoy_generation: bool) → List[SiriusFragmentAnnotation_SiriusTargetDecoySpectra]#

extractAnnotationsFromSiriusFile(self, path_to_sirius_workspace: String, max_rank: int, decoy: bool, use_exact_mass: bool) → List[MSSpectrum]#

extract_columnname_to_columnindex(self, csvfile: CsvFile) → Dict[bytes, int]#