FeatureFinderAlgorithmMetaboIdent#
- class pyopenms.FeatureFinderAlgorithmMetaboIdent#
Bases:
object
Cython implementation of _FeatureFinderAlgorithmMetaboIdent
- Original C++ documentation is available here
– Inherits from [‘DefaultParamHandler’]
- __init__(self) None #
Methods
__init__
(self)getChromatograms
(self)Retrieves chromatograms (empty if run was not executed)
getDefaults
(self)Returns the default parameters
getLibrary
(self)Retrieves the assay library (e.g., to store as TraML, empty if run was not executed)
getMSData
(self)Returns spectra
getNShared
(self)Retrieves number of features with shared identifications
getName
(self)Returns the name
getParameters
(self)Returns the parameters
getSubsections
(self)getTransformations
(self)Retrieves deviations between provided coordinates and extacted ones (e.g., to store as TrafoXML or for plotting)
run
(self, metaboIdentTable, features, ...)Run feature extraction.
setMSData
(self, input)Sets spectra
setName
(self, in_0)Sets the name
setParameters
(self, param)Sets the parameters
- getChromatograms(self) MSExperiment #
Retrieves chromatograms (empty if run was not executed)
- getLibrary(self) TargetedExperiment #
Retrieves the assay library (e.g., to store as TraML, empty if run was not executed)
- getMSData(self) MSExperiment #
Returns spectra
Retrieves number of features with shared identifications
- getSubsections(self) List[bytes] #
- getTransformations(self) TransformationDescription #
Retrieves deviations between provided coordinates and extacted ones (e.g., to store as TrafoXML or for plotting)
- run(self, metaboIdentTable: List[FeatureFinderMetaboIdentCompound], features: FeatureMap, spectra_path: bytes | str | String) None #
Run feature extraction. spectra_path get’s annotated as primaryMSRunPath in the resulting feature map.
- setMSData(self, input: MSExperiment) None #
Sets spectra