TargetedExperiment

class pyopenms.TargetedExperiment

Bases: object

Cython implementation of _TargetedExperiment

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TargetedExperiment) → None

Methods

__init__	Overload:
addCV(self, cv)
addCompound(self, rhs)
addContact(self, contact)
addExcludeTarget(self, target)
addIncludeTarget(self, target)
addInstrument(self, instrument)
addPeptide(self, rhs)
addProtein(self, protein)
addPublication(self, publication)
addSoftware(self, software)
addSourceFile(self, source_file)
addTargetCVTerm(self, cv_term)
addTransition(self, transition)
clear(self, clear_meta_data)
containsInvalidReferences(self)
getCVs(self)
getCompoundByRef(self, ref)
getCompounds(self)
getContacts(self)
getExcludeTargets(self)
getIncludeTargets(self)
getInstruments(self)
getPeptideByRef(self, ref)
getPeptides(self)
getProteinByRef(self, ref)
getProteins(self)
getPublications(self)
getSoftware(self)
getSourceFiles(self)
getTargetCVTerms(self)
getTransitions(self)
hasCompound(self, ref)
hasPeptide(self, ref)
hasProtein(self, ref)
setCVs(self, cvs)
setCompounds(self, rhs)
setContacts(self, contacts)
setExcludeTargets(self, targets)
setIncludeTargets(self, targets)
setInstruments(self, instruments)
setPeptides(self, rhs)
setProteins(self, proteins)
setPublications(self, publications)
setSoftware(self, software)
setSourceFiles(self, source_files)
setTargetCVTerms(self, cv_terms)
setTargetMetaValue(self, name, value)
setTransitions(self, transitions)
sortTransitionsByProductMZ(self)

addCV(self, cv: CV) → None

addCompound(self, rhs: Compound) → None

addContact(self, contact: Contact) → None

addExcludeTarget(self, target: IncludeExcludeTarget) → None

addIncludeTarget(self, target: IncludeExcludeTarget) → None

addInstrument(self, instrument: TargetedExperiment_Instrument) → None

addPeptide(self, rhs: Peptide) → None

addProtein(self, protein: Protein) → None

addPublication(self, publication: Publication) → None

addSoftware(self, software: Software) → None

addSourceFile(self, source_file: SourceFile) → None

addTargetCVTerm(self, cv_term: CVTerm) → None

addTransition(self, transition: ReactionMonitoringTransition) → None

clear(self, clear_meta_data: bool) → None

containsInvalidReferences(self) → bool

getCVs(self) → List[CV]

getCompoundByRef(self, ref: bytes | str | String) → Compound

getCompounds(self) → List[Compound]

getContacts(self) → List[Contact]

getExcludeTargets(self) → List[IncludeExcludeTarget]

getIncludeTargets(self) → List[IncludeExcludeTarget]

getInstruments(self) → List[TargetedExperiment_Instrument]

getPeptideByRef(self, ref: bytes | str | String) → Peptide

getPeptides(self) → List[Peptide]

getProteinByRef(self, ref: bytes | str | String) → Protein

getProteins(self) → List[Protein]

getPublications(self) → List[Publication]

getSoftware(self) → List[Software]

getSourceFiles(self) → List[SourceFile]

getTargetCVTerms(self) → CVTermList

getTransitions(self) → List[ReactionMonitoringTransition]

hasCompound(self, ref: bytes | str | String) → bool

hasPeptide(self, ref: bytes | str | String) → bool

hasProtein(self, ref: bytes | str | String) → bool

setCVs(self, cvs: List[CV]) → None

setCompounds(self, rhs: List[Compound]) → None

setContacts(self, contacts: List[Contact]) → None

setExcludeTargets(self, targets: List[IncludeExcludeTarget]) → None

setIncludeTargets(self, targets: List[IncludeExcludeTarget]) → None

setInstruments(self, instruments: List[TargetedExperiment_Instrument]) → None

setPeptides(self, rhs: List[Peptide]) → None

setProteins(self, proteins: List[Protein]) → None

setPublications(self, publications: List[Publication]) → None

setSoftware(self, software: List[Software]) → None

setSourceFiles(self, source_files: List[SourceFile]) → None

setTargetCVTerms(self, cv_terms: CVTermList) → None

setTargetMetaValue(self, name: bytes | str | String, value: int | float | bytes | str | List[int] | List[float] | List[bytes]) → None

setTransitions(self, transitions: List[ReactionMonitoringTransition]) → None

sortTransitionsByProductMZ(self) → None