MzDataFile#

class pyopenms.MzDataFile(*args, **kwargs)#

Bases: XMLFile

File adapter for MzData files ProgressLogger

__init__(self) → None#
__init__(self, arg: pyopenms._pyopenms_misc.MzDataFile, /) → None

Attributes

`endProgress`	Ends the progress display
`getLogType`	Returns the type of progress log being used
`getOptions`	Returns the options for loading/storing
`getVersion`	Return the version of the schema
`isSemanticallyValid`
`load`	Overloaded function.
`nextProgress`	Increment progress by 1 (according to range begin-end)
`setLogType`	Sets the progress log that should be used.
`setOptions`	Sets options for loading/storing
`setProgress`	Sets the current progress
`startProgress`
`store`	Loads a map from a MzData file :param filename: Directory of the file with the file name :param map: It has to be a MSExperiment or have the same interface :raises: Exception: FileNotFound is thrown if the file could not be opened :raises: Exception: ParseError is thrown if an error occurs during parsing

endProgress#: Ends the progress display

getLogType#: Returns the type of progress log being used

getOptions#: Returns the options for loading/storing

getVersion#: Return the version of the schema

isSemanticallyValid#

load#

Overloaded function.

load(self, filename: str) -> pyopenms._pyopenms_experiment.MSExperiment
load(self, filename: str, map: pyopenms._pyopenms_experiment.MSExperiment) -> None

Loads a map from a MzData file into the given MSExperiment

nextProgress#: Increment progress by 1 (according to range begin-end)

setLogType#: Sets the progress log that should be used. The default type is NONE!

setOptions#: Sets options for loading/storing

setProgress#: Sets the current progress

startProgress#

store#: Loads a map from a MzData file :param filename: Directory of the file with the file name :param map: It has to be a MSExperiment or have the same interface :raises: Exception: FileNotFound is thrown if the file could not be opened :raises: Exception: ParseError is thrown if an error occurs during parsing