FeatureFindingMetabo#

class pyopenms.FeatureFindingMetabo#

Bases: object

Cython implementation of _FeatureFindingMetabo

Original C++ documentation is available here

– Inherits from [‘ProgressLogger’, ‘DefaultParamHandler’]

__init__()#

Overload:

__init__(self) None

Method for the assembly of mass traces belonging to the same isotope pattern, i.e., that are compatible in retention times, mass-to-charge ratios, and isotope abundances

Overload:

__init__(self, in_0: FeatureFindingMetabo) None

Methods

__init__

Overload:

endProgress(self)

Ends the progress display

getDefaults(self)

Returns the default parameters

getLogType(self)

Returns the type of progress log being used

getName(self)

Returns the name

getParameters(self)

Returns the parameters

getSubsections(self)

nextProgress(self)

Increment progress by 1 (according to range begin-end)

run(self, input_mtraces, output_featmap, ...)

setLogType(self, in_0)

Sets the progress log that should be used.

setName(self, in_0)

Sets the name

setParameters(self, param)

Sets the parameters

setProgress(self, value)

Sets the current progress

startProgress(self, begin, end, label)

endProgress(self) None#

Ends the progress display

getDefaults(self) Param#

Returns the default parameters

getLogType(self) int#

Returns the type of progress log being used

getName(self) bytes | str | String#

Returns the name

getParameters(self) Param#

Returns the parameters

getSubsections(self) List[bytes]#
nextProgress(self) None#

Increment progress by 1 (according to range begin-end)

run(self, input_mtraces: List[Kernel_MassTrace], output_featmap: FeatureMap, output_chromatograms: List[List[MSChromatogram]]) None#
setLogType(self, in_0: int) None#

Sets the progress log that should be used. The default type is NONE!

setName(self, in_0: bytes | str | String) None#

Sets the name

setParameters(self, param: Param) None#

Sets the parameters

setProgress(self, value: int) None#

Sets the current progress

startProgress(self, begin: int, end: int, label: bytes | str | String) None#