DecoyGenerator#

class pyopenms.DecoyGenerator#

Bases: object

Cython implementation of _DecoyGenerator

Original C++ documentation is available here

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: DecoyGenerator) → None

Methods

`__init__`	Overload:
`reversePeptides`(self, protein, protease)	Reverses the protein's peptide sequences between enzymatic cutting positions
`reverseProtein`(self, protein)	Reverses the protein sequence
`setSeed`(self, in_0)
`shufflePeptides`(self, aas, protease, ...)	Shuffle the protein's peptide sequences between enzymatic cutting positions, each peptide is shuffled @param max_attempts times to minimize sequence identity

reversePeptides(self, protein: AASequence, protease: bytes | str | String) → AASequence#: Reverses the protein’s peptide sequences between enzymatic cutting positions

reverseProtein(self, protein: AASequence) → AASequence#: Reverses the protein sequence

setSeed(self, in_0: int) → None#

shufflePeptides(self, aas: AASequence, protease: bytes | str | String, max_attempts: int) → AASequence#: Shuffle the protein’s peptide sequences between enzymatic cutting positions, each peptide is shuffled @param max_attempts times to minimize sequence identity