Ribonucleotide

class pyopenms.Ribonucleotide

Bases: object

Cython implementation of _Ribonucleotide

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: Ribonucleotide) → None

Overload:

__init__(self, name: bytes | str | String, code: bytes | str | String, new_code: bytes | str | String, html_code: bytes | str | String, formula: EmpiricalFormula, origin: bytes, mono_mass: float, avg_mass: float, term_spec: int, baseloss_formula: EmpiricalFormula) → None

Methods

__init__	Overload:
getAvgMass(self)	Returns average mass of the ribonucleotide
getBaselossFormula(self)	Returns sum formula after loss of the nucleobase
getCode(self)	Returns the short name
getFormula(self)	Returns the empirical formula of the residue
getHTMLCode(self)	Returns the HTML (RNAMods) code
getMonoMass(self)	Returns monoisotopic mass of the ribonucleotide
getName(self)	Returns the name of the ribonucleotide
getNewCode(self)	Returns the new code
getOrigin(self)	Returns the code of the unmodified base (e.g., "A", "C", ...)
getTermSpecificity(self)	Returns the terminal specificity
isModified(self)	True if the ribonucleotide is a modified one
setAvgMass(self, avg_mass)	Sets average mass of the ribonucleotide
setBaselossFormula(self, formula)	Sets sum formula after loss of the nucleobase
setCode(self, code)	Sets the short name
setFormula(self, formula)	Sets empirical formula of the ribonucleotide (must be full, with N and C-terminus)
setHTMLCode(self, html_code)	Sets the HTML (RNAMods) code
setMonoMass(self, mono_mass)	Sets monoisotopic mass of the ribonucleotide
setName(self, name)	Sets the name of the ribonucleotide
setNewCode(self, code)	Sets the new code
setOrigin(self, origin)	Sets the code of the unmodified base (e.g., "A", "C", ...)
setTermSpecificity(self, term_spec)	Sets the terminal specificity

getAvgMass(self) → float

Returns average mass of the ribonucleotide

getBaselossFormula(self) → EmpiricalFormula

Returns sum formula after loss of the nucleobase

getCode(self) → bytes | str | String

Returns the short name

getFormula(self) → EmpiricalFormula

Returns the empirical formula of the residue

getHTMLCode(self) → bytes | str | String

Returns the HTML (RNAMods) code

getMonoMass(self) → float

Returns monoisotopic mass of the ribonucleotide

getName(self) → bytes | str | String

Returns the name of the ribonucleotide

getNewCode(self) → bytes | str | String

Returns the new code

getOrigin(self) → bytes

Returns the code of the unmodified base (e.g., “A”, “C”, …)

getTermSpecificity(self) → int

Returns the terminal specificity

isModified(self) → bool

True if the ribonucleotide is a modified one

setAvgMass(self, avg_mass: float) → None

Sets average mass of the ribonucleotide

setBaselossFormula(self, formula: EmpiricalFormula) → None

Sets sum formula after loss of the nucleobase

setCode(self, code: bytes | str | String) → None

Sets the short name

setFormula(self, formula: EmpiricalFormula) → None

Sets empirical formula of the ribonucleotide (must be full, with N and C-terminus)

setHTMLCode(self, html_code: bytes | str | String) → None

Sets the HTML (RNAMods) code

setMonoMass(self, mono_mass: float) → None

Sets monoisotopic mass of the ribonucleotide

setName(self, name: bytes | str | String) → None

Sets the name of the ribonucleotide

setNewCode(self, code: bytes | str | String) → None

Sets the new code

setOrigin(self, origin: bytes) → None

Sets the code of the unmodified base (e.g., “A”, “C”, …)

setTermSpecificity(self, term_spec: int) → None

Sets the terminal specificity