OpenSwathDataAccessHelper#
- class pyopenms.OpenSwathDataAccessHelper#
Bases:
object
Cython implementation of _OpenSwathDataAccessHelper
Original C++ documentation is available here
- __init__()#
Overload:
- __init__(self) None
Overload:
- __init__(self, in_0: OpenSwathDataAccessHelper) None
Methods
Overload:
convertPeptideToAASequence
(self, peptide, ...)Converts from the LightCompound to an OpenMS AASequence (with correct modifications)
convertTargetedCompound
(self, pep, p)Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
convertTargetedExp
(self, transition_exp_, ...)Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment
convertToOpenMSChromatogram
(self, cptr, ...)Converts a ChromatogramPtr to an OpenMS Chromatogram
convertToOpenMSChromatogramFilter
(self, ...)convertToOpenMSSpectrum
(self, sptr, spectrum)Converts a SpectrumPtr to an OpenMS Spectrum
- convertPeptideToAASequence(self, peptide: LightCompound, aa_sequence: AASequence) None #
Converts from the LightCompound to an OpenMS AASequence (with correct modifications)
- convertTargetedCompound(self, pep: Peptide, p: LightCompound) None #
Converts from the OpenMS TargetedExperiment Peptide to the LightTargetedExperiment Peptide
- convertTargetedExp(self, transition_exp_: TargetedExperiment, transition_exp: LightTargetedExperiment) None #
Converts from the OpenMS TargetedExperiment to the OpenMs LightTargetedExperiment
- convertToChromatogramPtr()#
- convertToOpenMSChromatogram(self, cptr: OSChromatogram, chromatogram: MSChromatogram) None #
Converts a ChromatogramPtr to an OpenMS Chromatogram
- convertToOpenMSChromatogramFilter(self, chromatogram: MSChromatogram, cptr: OSChromatogram, rt_min: float, rt_max: float) None #
- convertToOpenMSSpectrum(self, sptr: OSSpectrum, spectrum: MSSpectrum) None #
Converts a SpectrumPtr to an OpenMS Spectrum
- convertToSpectrumPtr()#