OMSSACSVFile#

class pyopenms.OMSSACSVFile#

Bases: object

Cython implementation of _OMSSACSVFile

Original C++ documentation is available here

File adapter for OMSSACSV files

The files contain the results of the OMSSA algorithm in a comma separated manner. This file adapter is able to load the data from such a file into the structures of OpenMS

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: OMSSACSVFile) → None

Methods

__init__

Overload:

load(self, filename, protein_identification, ...)

Loads a OMSSA file

load(self, filename: bytes | str | String, protein_identification: ProteinIdentification, id_data: List[PeptideIdentification]) → None#

Loads a OMSSA file

The content of the file is stored in features

Parameters:

filename – The name of the file to read from
protein_identification – The protein ProteinIdentification data
id_data – The peptide ids of the file

Raises:

Exception: FileNotFound is thrown if the file could not be opened

Raises:

Exception: ParseError is thrown if an error occurs during parsing