DigestionEnzymeProtein

class pyopenms.DigestionEnzymeProtein

Bases: object

Cython implementation of _DigestionEnzymeProtein

Original C++ documentation is available here

– Inherits from [‘DigestionEnzyme’]

Representation of a digestion enzyme for proteins (protease)

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: DigestionEnzymeProtein) → None

Overload:

__init__(self, name: bytes | str | String, cleavage_regex: bytes | str | String, synonyms: Set[bytes], regex_description: bytes | str | String, n_term_gain: EmpiricalFormula, c_term_gain: EmpiricalFormula, psi_id: bytes | str | String, xtandem_id: bytes | str | String, comet_id: int, omssa_id: int) → None

Methods

__init__	Overload:
addSynonym(self, synonym)	Adds a synonym
getCTermGain(self)	Returns the C-term gain
getCometID(self)	Returns the Comet enzyme ID
getMSGFID(self)	Returns the MSGFPlus enzyme id
getNTermGain(self)	Returns the N-term gain
getName(self)	Returns the name of the enzyme
getOMSSAID(self)	Returns the OMSSA enzyme ID
getPSIID(self)	Returns the PSI ID
getRegEx(self)	Returns the cleavage regex
getRegExDescription(self)	Returns the regex description
getSynonyms(self)	Returns the synonyms
getXTandemID(self)	Returns the X! Tandem enzyme ID
setCTermGain(self, value)	Sets the C-term gain
setCometID(self, value)	Sets the Comet enzyme ID
setMSGFID(self, value)	Sets the MSGFPlus enzyme id
setNTermGain(self, value)	Sets the N-term gain
setName(self, name)	Sets the name of the enzyme
setOMSSAID(self, value)	Sets the OMSSA enzyme ID
setPSIID(self, value)	Sets the PSI ID
setRegEx(self, cleavage_regex)	Sets the cleavage regex
setRegExDescription(self, value)	Sets the regex description
setSynonyms(self, synonyms)	Sets the synonyms
setValueFromFile(self, key, value)	Sets the value of a member variable based on an entry from an input file
setXTandemID(self, value)	Sets the X! Tandem enzyme ID

addSynonym(self, synonym: bytes | str | String) → None

Adds a synonym

getCTermGain(self) → EmpiricalFormula

Returns the C-term gain

getCometID(self) → int

Returns the Comet enzyme ID

getMSGFID(self) → int

Returns the MSGFPlus enzyme id

getNTermGain(self) → EmpiricalFormula

Returns the N-term gain

getName(self) → bytes | str | String

Returns the name of the enzyme

getOMSSAID(self) → int

Returns the OMSSA enzyme ID

getPSIID(self) → bytes | str | String

Returns the PSI ID

getRegEx(self) → bytes | str | String

Returns the cleavage regex

getRegExDescription(self) → bytes | str | String

Returns the regex description

getSynonyms(self) → Set[bytes]

Returns the synonyms

getXTandemID(self) → bytes | str | String

Returns the X! Tandem enzyme ID

setCTermGain(self, value: EmpiricalFormula) → None

Sets the C-term gain

setCometID(self, value: int) → None

Sets the Comet enzyme ID

setMSGFID(self, value: int) → None

Sets the MSGFPlus enzyme id

setNTermGain(self, value: EmpiricalFormula) → None

Sets the N-term gain

setName(self, name: bytes | str | String) → None

Sets the name of the enzyme

setOMSSAID(self, value: int) → None

Sets the OMSSA enzyme ID

setPSIID(self, value: bytes | str | String) → None

Sets the PSI ID

setRegEx(self, cleavage_regex: bytes | str | String) → None

Sets the cleavage regex

setRegExDescription(self, value: bytes | str | String) → None

Sets the regex description

setSynonyms(self, synonyms: Set[bytes]) → None

Sets the synonyms

setValueFromFile(self, key: bytes | str | String, value: bytes | str | String) → bool

Sets the value of a member variable based on an entry from an input file

setXTandemID(self, value: bytes | str | String) → None

Sets the X! Tandem enzyme ID