CrossLinksDB

class pyopenms.CrossLinksDB

Bases: object

Cython implementation of _CrossLinksDB

Original C++ documentation is available here

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)
findModificationIndex(self, mod_name)
getAllSearchModifications(self, modifications)
getBestModificationByDiffMonoMass(self, ...)
getModification	Overload:
getNumberOfModifications(self)
has(self, modification)
isInstantiated(self)
readFromOBOFile(self, filename)
searchModifications(self, mods, mod_name, ...)
searchModificationsByDiffMonoMass(self, ...)

findModificationIndex(self, mod_name: bytes | str | String) → int

getAllSearchModifications(self, modifications: List[bytes]) → None

getBestModificationByDiffMonoMass(self, mass: float, max_error: float, residue: bytes | str | String, term_spec: int) → ResidueModification

getModification()

Overload:

getModification(self, index: int) → ResidueModification

Overload:

getModification(self, mod_name: bytes | str | String) → ResidueModification

Overload:

getModification(self, mod_name: bytes | str | String, residue: bytes | str | String, term_spec: int) → ResidueModification

getNumberOfModifications(self) → int

has(self, modification: bytes | str | String) → bool

isInstantiated(self) → bool

readFromOBOFile(self, filename: bytes | str | String) → None

searchModifications(self, mods: Set[ResidueModification], mod_name: bytes | str | String, residue: bytes | str | String, term_spec: int) → None

searchModificationsByDiffMonoMass(self, mods: List[bytes], mass: float, max_error: float, residue: bytes | str | String, term_spec: int) → None