PepXMLFile#

class pyopenms.PepXMLFile#

Bases: object

Cython implementation of _PepXMLFile

Original C++ documentation is available here

__init__(self) None#

Methods

__init__(self)

keepNativeSpectrumName(self, keep)

load

Overload:

setParseUnknownScores(self, parse_unknown_scores)

store

Overload:

keepNativeSpectrumName(self, keep: bool) None#
load()#

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) None

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: bytes | str | String) None

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: bytes | str | String, lookup: SpectrumMetaDataLookup) None
setParseUnknownScores(self, parse_unknown_scores: bool) None#
store()#

Overload:

store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) None

Overload:

store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], mz_file: bytes | str | String, mz_name: bytes | str | String, peptideprophet_analyzed: bool, rt_tolerance: float) None