PepXMLFile#
- class pyopenms.PepXMLFile#
Bases:
object
Cython implementation of _PepXMLFile
Original C++ documentation is available here
- __init__(self) None #
Methods
__init__
(self)keepNativeSpectrumName
(self, keep)Overload:
setParseUnknownScores
(self, parse_unknown_scores)Overload:
- keepNativeSpectrumName(self, keep: bool) None #
- load()#
Overload:
- load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) None
Overload:
- load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: bytes | str | String) None
Overload:
- load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], experiment_name: bytes | str | String, lookup: SpectrumMetaDataLookup) None
- setParseUnknownScores(self, parse_unknown_scores: bool) None #
- store()#
Overload:
- store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification]) None
Overload:
- store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: List[PeptideIdentification], mz_file: bytes | str | String, mz_name: bytes | str | String, peptideprophet_analyzed: bool, rt_tolerance: float) None