RibonucleotideDB

class pyopenms.RibonucleotideDB

Bases: object

Database of ribonucleotides (modified and unmodified). This is a singleton class. The ribonucleotides are read from data/CHEMISTRY/Modomics.tsv and Custom_RNA_modifications.tsv.

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)
getInstance()	Returns the singleton instance
getRibonucleotide(code)	Returns the ribonucleotide with the given code
getRibonucleotideAlternatives(code)	Returns the two alternatives for an ambiguous modification code as a tuple
getRibonucleotidePrefix(seq)	Returns the ribonucleotide matching the longest prefix

static getInstance() → pyopenms.RibonucleotideDB

Returns the singleton instance

getRibonucleotide(code: str) → pyopenms.Ribonucleotide

Returns the ribonucleotide with the given code

getRibonucleotideAlternatives(code: str) → tuple

Returns the two alternatives for an ambiguous modification code as a tuple

getRibonucleotidePrefix(seq: str) → pyopenms.Ribonucleotide

Returns the ribonucleotide matching the longest prefix