OpenSwathScoring#
- class pyopenms.OpenSwathScoring#
Bases:
object
Cython implementation of _OpenSwathScoring
Original C++ documentation is available here
- __init__()#
Overload:
- __init__(self) None
Overload:
- __init__(self, in_0: OpenSwathScoring) None
Methods
Overload:
getNormalized_library_intensities_
(self, ...)initialize
(self, rt_normalization_factor, ...)Initialize the scoring object
- getNormalized_library_intensities_(self, transitions: List[LightTransition], normalized_library_intensity: List[float]) None #
- initialize(self, rt_normalization_factor: float, add_up_spectra: int, spacing_for_spectra_resampling: float, drift_extra: float, su: OpenSwath_Scores_Usage, spectrum_addition_method: bytes, use_ms1_ion_mobility: bool) None #
Initialize the scoring object
Sets the parameters for the scoring
- Parameters:
rt_normalization_factor – Specifies the range of the normalized retention time space
add_up_spectra – How many spectra to add up (default 1)
spacing_for_spectra_resampling – Spacing factor for spectra addition
su – Which scores to actually compute
spectrum_addition_method – Method to use for spectrum addition (valid: “simple”, “resample”)