OpenSwath_Scores#

class pyopenms.OpenSwath_Scores#

Bases: object

Cython implementation of _OpenSwath_Scores

Original C++ documentation is available here

__init__(self) → None#

Methods

`__init__`(self)
`calculate_lda_prescore`(self, scores)
`calculate_swath_lda_prescore`(self, scores)
`get_quick_lda_score`(self, library_corr_, ...)

Attributes

`bseries_score`
`dotprod_score_dia`
`elution_model_fit_score`
`intensity`
`isotope_correlation`
`isotope_overlap`
`library_corr`
`library_dotprod`
`library_manhattan`
`library_norm_manhattan`
`library_rootmeansquare`
`library_sangle`
`log_sn_score`
`manhatt_score_dia`
`massdev_score`
`mi_score`
`ms1_isotope_correlation`
`ms1_isotope_overlap`
`ms1_mi_combined_score`
`ms1_mi_contrast_score`
`ms1_mi_score`
`ms1_ppm_score`
`ms1_xcorr_coelution_combined_score`
`ms1_xcorr_coelution_contrast_score`
`ms1_xcorr_coelution_score`
`ms1_xcorr_shape_combined_score`
`ms1_xcorr_shape_contrast_score`
`ms1_xcorr_shape_score`
`norm_rt_score`
`normalized_experimental_rt`
`nr_peaks`
`raw_rt_score`
`rt_difference`
`sn_ratio`
`sonar_diff`
`sonar_lag`
`sonar_rsq`
`sonar_shape`
`sonar_sn`
`sonar_trend`
`total_xic`
`weighted_coelution_score`
`weighted_massdev_score`
`weighted_mi_score`
`weighted_xcorr_shape`
`xcorr_coelution_score`
`xcorr_shape_score`
`yseries_score`

bseries_score#

calculate_lda_prescore(self, scores: OpenSwath_Scores) → float#

calculate_swath_lda_prescore(self, scores: OpenSwath_Scores) → float#

dotprod_score_dia#

elution_model_fit_score#

get_quick_lda_score(self, library_corr_: float, library_norm_manhattan_: float, norm_rt_score_: float, xcorr_coelution_score_: float, xcorr_shape_score_: float, log_sn_score_: float) → float#

intensity#

isotope_correlation#

isotope_overlap#

library_corr#

library_dotprod#

library_manhattan#

library_norm_manhattan#

library_rootmeansquare#

library_sangle#

log_sn_score#

manhatt_score_dia#

massdev_score#

mi_score#

ms1_isotope_correlation#

ms1_isotope_overlap#

ms1_mi_combined_score#

ms1_mi_contrast_score#

ms1_mi_score#

ms1_ppm_score#

ms1_xcorr_coelution_combined_score#

ms1_xcorr_coelution_contrast_score#

ms1_xcorr_coelution_score#

ms1_xcorr_shape_combined_score#

ms1_xcorr_shape_contrast_score#

ms1_xcorr_shape_score#

norm_rt_score#

normalized_experimental_rt#

nr_peaks#

raw_rt_score#

rt_difference#

sn_ratio#

sonar_diff#

sonar_lag#

sonar_rsq#

sonar_shape#

sonar_sn#

sonar_trend#

total_xic#

weighted_coelution_score#

weighted_massdev_score#

weighted_mi_score#

weighted_xcorr_shape#

xcorr_coelution_score#

xcorr_shape_score#

yseries_score#