MapAlignmentAlgorithmIdentification

class pyopenms.MapAlignmentAlgorithmIdentification

Bases: object

Cython implementation of _MapAlignmentAlgorithmIdentification

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__(self) → None

Methods

__init__(self)
align	Overload:
align_4	Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)
endProgress(self)	Ends the progress display
getDefaults(self)	Returns the default parameters
getLogType(self)	Returns the type of progress log being used
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getSubsections(self)
nextProgress(self)	Increment progress by 1 (according to range begin-end)
setLogType(self, in_0)	Sets the progress log that should be used.
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters
setProgress(self, value)	Sets the current progress
setReference	Overload:
startProgress(self, begin, end, label)

align()

Overload:

align(self, in_0: List[MSExperiment], in_1: List[TransformationDescription], in_2: int) → None

Overload:

align(self, in_0: List[FeatureMap], in_1: List[TransformationDescription], in_2: int) → None

Overload:

align(self, in_0: List[ConsensusMap], in_1: List[TransformationDescription], in_2: int) → None

align_4()

Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)

endProgress(self) → None

Ends the progress display

getDefaults(self) → Param

Returns the default parameters

getLogType(self) → int

Returns the type of progress log being used

getName(self) → bytes | str | String

Returns the name

getParameters(self) → Param

Returns the parameters

getSubsections(self) → List[bytes]

nextProgress(self) → None

Increment progress by 1 (according to range begin-end)

setLogType(self, in_0: int) → None

Sets the progress log that should be used. The default type is NONE!

setName(self, in_0: bytes | str | String) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters

setProgress(self, value: int) → None

Sets the current progress

setReference()

Overload:

setReference(self, in_0: MSExperiment) → None

Overload:

setReference(self, in_0: FeatureMap) → None

Overload:

setReference(self, in_0: ConsensusMap) → None

Overload:

setReference(self, in_0: List[PeptideIdentification]) → None

startProgress(self, begin: int, end: int, label: bytes | str | String) → None