MapAlignmentAlgorithmIdentification#
- class pyopenms.MapAlignmentAlgorithmIdentification#
Bases:
object
Cython implementation of _MapAlignmentAlgorithmIdentification
- Original C++ documentation is available here
– Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]
- __init__(self) None #
Methods
__init__
(self)Overload:
Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)
endProgress
(self)Ends the progress display
getDefaults
(self)Returns the default parameters
getLogType
(self)Returns the type of progress log being used
getName
(self)Returns the name
getParameters
(self)Returns the parameters
getSubsections
(self)nextProgress
(self)Increment progress by 1 (according to range begin-end)
setLogType
(self, in_0)Sets the progress log that should be used.
setName
(self, in_0)Sets the name
setParameters
(self, param)Sets the parameters
setProgress
(self, value)Sets the current progress
Overload:
startProgress
(self, begin, end, label)- align()#
Overload:
- align(self, in_0: List[MSExperiment], in_1: List[TransformationDescription], in_2: int) None
Overload:
- align(self, in_0: List[FeatureMap], in_1: List[TransformationDescription], in_2: int) None
Overload:
- align(self, in_0: List[ConsensusMap], in_1: List[TransformationDescription], in_2: int) None
- align_4()#
Parameters: ids (list): list of lists of PeptideIdentification objects trafos (list): list of TransformationDescription objects ref_index (int)
- endProgress(self) None #
Ends the progress display
- getLogType(self) int #
Returns the type of progress log being used
- getSubsections(self) List[bytes] #
- nextProgress(self) None #
Increment progress by 1 (according to range begin-end)
- setLogType(self, in_0: int) None #
Sets the progress log that should be used. The default type is NONE!
- setProgress(self, value: int) None #
Sets the current progress
- setReference()#
Overload:
- setReference(self, in_0: MSExperiment) None
Overload:
- setReference(self, in_0: FeatureMap) None
Overload:
- setReference(self, in_0: ConsensusMap) None
Overload:
- setReference(self, in_0: List[PeptideIdentification]) None