DIAScoring#
- class pyopenms.DIAScoring#
Bases:
object
Cython implementation of _DIAScoring
- Original C++ documentation is available here
– Inherits from [‘DefaultParamHandler’]
- __init__(self) None #
Methods
__init__
(self)dia_ms1_isotope_scores
(self, precursor_mz, ...)dia_ms1_isotope_scores_averagine
(self, ...)dia_ms1_massdiff_score
(self, precursor_mz, ...)getDefaults
(self)Returns the default parameters
getName
(self)Returns the name
getParameters
(self)Returns the parameters
getSubsections
(self)score_with_isotopes
(self, spectrum, ...)setName
(self, in_0)Sets the name
setParameters
(self, param)Sets the parameters
- dia_by_ion_score()#
- dia_ms1_isotope_scores(self, precursor_mz: float, spectrum: List[OSSpectrum], im_range: RangeMobility, isotope_corr: float, isotope_overlap: float, sum_formula: EmpiricalFormula) None #
- dia_ms1_isotope_scores_averagine(self, precursor_mz: float, spectrum: List[OSSpectrum], charge_state: int, im_range: RangeMobility, isotope_corr: float, isotope_overlap: float) None #
- dia_ms1_massdiff_score(self, precursor_mz: float, spectrum: List[OSSpectrum], im_range: RangeMobility, ppm_score: float) bool #
- getSubsections(self) List[bytes] #
- score_with_isotopes(self, spectrum: List[OSSpectrum], transitions: List[LightTransition], im_range: RangeMobility, dotprod: float, manhattan: float) None #