TargetedSpectraExtractor#

class pyopenms.TargetedSpectraExtractor#

Bases: object

Cython implementation of _TargetedSpectraExtractor

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()#

Overload:

__init__(self) None

Overload:

__init__(self, in_0: TargetedSpectraExtractor) None

Methods

__init__

Overload:

annotateSpectra

Overload:

constructTransitionsList(self, in_0, in_1, in_2)

extractSpectra

Overload:

getDefaultParameters(self, in_0)

getDefaults(self)

Returns the default parameters

getName(self)

Returns the name

getParameters(self)

Returns the parameters

getSubsections(self)

mergeFeatures(self, in_0, in_1)

pickSpectrum(self, in_0, in_1)

scoreSpectra

Overload:

searchSpectrum(self, in_0, in_1, in_2)

selectSpectra

Overload:

setName(self, in_0)

Sets the name

setParameters(self, param)

Sets the parameters

storeSpectraMSP(self, in_0, in_1)

annotateSpectra()#

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: TargetedExperiment, in_2: List[MSSpectrum], in_3: FeatureMap) None

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: TargetedExperiment, in_2: List[MSSpectrum]) None

Overload:

annotateSpectra(self, in_0: List[MSSpectrum], in_1: FeatureMap, in_2: FeatureMap, in_3: List[MSSpectrum]) None
constructTransitionsList(self, in_0: FeatureMap, in_1: FeatureMap, in_2: TargetedExperiment) None#
extractSpectra()#

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: TargetedExperiment, in_2: List[MSSpectrum], in_3: FeatureMap, in_4: bool) None

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: TargetedExperiment, in_2: List[MSSpectrum]) None

Overload:

extractSpectra(self, in_0: MSExperiment, in_1: FeatureMap, in_2: List[MSSpectrum]) None
getDefaultParameters(self, in_0: Param) None#
getDefaults(self) Param#

Returns the default parameters

getName(self) bytes | str | String#

Returns the name

getParameters(self) Param#

Returns the parameters

getSubsections(self) List[bytes]#
mergeFeatures(self, in_0: FeatureMap, in_1: FeatureMap) None#
pickSpectrum(self, in_0: MSSpectrum, in_1: MSSpectrum) None#
scoreSpectra()#

Overload:

scoreSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum], in_2: FeatureMap, in_3: List[MSSpectrum]) None

Overload:

scoreSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum], in_2: List[MSSpectrum]) None
searchSpectrum(self, in_0: FeatureMap, in_1: FeatureMap, in_2: bool) None#
selectSpectra()#

Overload:

selectSpectra(self, in_0: List[MSSpectrum], in_1: FeatureMap, in_2: List[MSSpectrum], in_3: FeatureMap) None

Overload:

selectSpectra(self, in_0: List[MSSpectrum], in_1: List[MSSpectrum]) None
setName(self, in_0: bytes | str | String) None#

Sets the name

setParameters(self, param: Param) None#

Sets the parameters

storeSpectraMSP(self, in_0: bytes | str | String, in_1: MSExperiment) None#