PeakPickerIterative#

class pyopenms.PeakPickerIterative#

Bases: object

Cython implementation of _PeakPickerIterative

Original C++ documentation is available here: – Inherits from [‘DefaultParamHandler’, ‘ProgressLogger’]

__init__()#

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: PeakPickerIterative) → None

Methods

`__init__`	Overload:
`endProgress`(self)	Ends the progress display
`getDefaults`(self)	Returns the default parameters
`getLogType`(self)	Returns the type of progress log being used
`getName`(self)	Returns the name
`getParameters`(self)	Returns the parameters
`getSubsections`(self)
`nextProgress`(self)	Increment progress by 1 (according to range begin-end)
`pick`(self, input, output)	This will pick one single spectrum.
`pickExperiment`(self, input, output)
`setLogType`(self, in_0)	Sets the progress log that should be used.
`setName`(self, in_0)	Sets the name
`setParameters`(self, param)	Sets the parameters
`setProgress`(self, value)	Sets the current progress
`startProgress`(self, begin, end, label)

endProgress(self) → None#: Ends the progress display

getDefaults(self) → Param#: Returns the default parameters

getLogType(self) → int#: Returns the type of progress log being used

getName(self) → bytes | str | String#: Returns the name

getParameters(self) → Param#: Returns the parameters

getSubsections(self) → List[bytes]#

nextProgress(self) → None#: Increment progress by 1 (according to range begin-end)

pick(self, input: MSSpectrum, output: MSSpectrum) → None#

This will pick one single spectrum. The PeakPickerHiRes is used to generate seeds, these seeds are then used to re-center the mass and compute peak width and integrated intensity of the peak

Finally, other peaks that would fall within the primary peak are discarded

The output are the remaining peaks

pickExperiment(self, input: MSExperiment, output: MSExperiment) → None#

setLogType(self, in_0: int) → None#: Sets the progress log that should be used. The default type is NONE!

setName(self, in_0: bytes | str | String) → None#: Sets the name

setParameters(self, param: Param) → None#: Sets the parameters

setProgress(self, value: int) → None#: Sets the current progress

startProgress(self, begin: int, end: int, label: bytes | str | String) → None#