OPXLHelper

class pyopenms.OPXLHelper(*args, **kwargs)

Bases: object

The OPXLHelper class contains functions needed by OpenPepXL to reduce duplicated code

__init__(self) → None

__init__(self, arg: pyopenms._pyopenms_analysis.OPXLHelper, /) → None

Attributes

addBetaAccessions	In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.
addPercolatorFeatureList
addProteinPositionMetaValues	Adds MetaValues for cross-link positions to PeptideHits
addXLTargetDecoyMV	In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.
buildCandidates
buildFragmentAnnotations
buildPeptideIDs
collectPrecursorCandidates
combineTopRanksFromPairs
computeDeltaScores	In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.
computePrecursorError
digestDatabase
enumerateCrossLinksAndMasses
isoPeakMeans
removeBetaPeptideHits	In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.

addBetaAccessions

In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.

addPercolatorFeatureList = <nanobind.nb_func object>

addProteinPositionMetaValues

Adds MetaValues for cross-link positions to PeptideHits

In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.

addXLTargetDecoyMV

In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.

buildCandidates = <nanobind.nb_func object>

buildFragmentAnnotations = <nanobind.nb_func object>

buildPeptideIDs = <nanobind.nb_func object>

collectPrecursorCandidates = <nanobind.nb_func object>

combineTopRanksFromPairs = <nanobind.nb_func object>

computeDeltaScores

In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.

computePrecursorError = <nanobind.nb_func object>

digestDatabase = <nanobind.nb_func object>

enumerateCrossLinksAndMasses = <nanobind.nb_func object>

isoPeakMeans = <nanobind.nb_func object>

removeBetaPeptideHits

In/out compatibility (pyOpenMS 3.5 behaviour): a Python list passed as peptide_ids is also updated in place with the returned contents.