FLASHDeconvSpectrumFile

class pyopenms.FLASHDeconvSpectrumFile

Bases: object

Cython implementation of _FLASHDeconvSpectrumFile

Original C++ documentation is available here

FLASHDeconv Spectrum level output *.tsv, *.msalign (for TopPIC) file formats. This class provides static methods for writing deconvolved spectrum data. Note: Methods taking std::ostream are not directly exposed. Use file-based workflows.

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: FLASHDeconvSpectrumFile) → None

Methods

__init__
writeMzML	__static_FLASHDeconvSpectrumFile_writeMzML(map_in: MSExperiment , deconvolved_spectra: List[DeconvolvedSpectrum] , deconvolved_mzML_file: String , annotated_mzML_file: String , mzml_charge: int , tols: List[float] ) -> None

writeMzML()

__static_FLASHDeconvSpectrumFile_writeMzML(map_in: MSExperiment , deconvolved_spectra: List[DeconvolvedSpectrum] , deconvolved_mzML_file: String , annotated_mzML_file: String , mzml_charge: int , tols: List[float] ) -> None

Write deconvolved and annotated mzML files. :param map_in: The original MSExperiment :param deconvolved_spectra: The deconvolved spectra :param deconvolved_mzML_file: Output path for deconvolved mzML :param annotated_mzML_file: Output path for annotated mzML :param mzml_charge: Charge to use in output mzML :param tols: Mass tolerances per MS level