Peptide

class pyopenms.Peptide

Bases: object

Cython implementation of _Peptide

Original C++ documentation is available here

– Inherits from [‘CVTermList’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: Peptide) → None

Methods

__init__	Overload:
addCVTerm(self, term)	Adds a CV term
clearMetaInfo(self)	Removes all meta values
consumeCVTerms(self, cv_term_map)	Merges the given map into the member map, no duplicate checking
empty(self)
getCVTerms(self)	Returns the accession string of the term
getChargeState(self)	Returns the peptide or compound charge state
getKeys(self, keys)	Fills the given vector with a list of all keys for which a value is set
getMetaValue(self, in_0)	Returns the value corresponding to a string, or
getPeptideGroupLabel(self)	Get the peptide group label
getRetentionTime(self)	Gets compound or peptide retention time
getRetentionTimeType(self)	Get compound or peptide retentiontime type
getRetentionTimeUnit(self)	Get compound or peptide retentiontime unit (minute/seconds)
hasCVTerm(self, accession)
hasCharge(self)	Whether product has set charge state
hasRetentionTime(self)	Gets compound or peptide retention time
isMetaEmpty(self)	Returns if the MetaInfo is empty
metaRegistry(self)	Returns a reference to the MetaInfoRegistry
metaValueExists(self, in_0)	Returns whether an entry with the given name exists
removeMetaValue(self, in_0)	Removes the DataValue corresponding to name if it exists
replaceCVTerm(self, term)	Replaces the specified CV term
replaceCVTerms(self, cv_terms, accession)
setCVTerms(self, terms)	Sets the CV terms
setChargeState(self, charge)	Sets the peptide or compound charge states
setMetaValue(self, in_0, in_1)	Sets the DataValue corresponding to a name
setPeptideGroupLabel(self, label)	Sets the peptide group label

Attributes

evidence
id
mods
protein_refs
rts
sequence

addCVTerm(self, term: CVTerm) → None

Adds a CV term

clearMetaInfo(self) → None

Removes all meta values

consumeCVTerms(self, cv_term_map: Dict[bytes, List[CVTerm]]) → None

Merges the given map into the member map, no duplicate checking

empty(self) → bool

evidence

getCVTerms(self) → Dict[bytes, List[CVTerm]]

Returns the accession string of the term

getChargeState(self) → int

Returns the peptide or compound charge state

getKeys(self, keys: List[bytes]) → None

Fills the given vector with a list of all keys for which a value is set

getMetaValue(self, in_0: bytes | str | String) → int | float | bytes | str | List[int] | List[float] | List[bytes]

Returns the value corresponding to a string, or

getPeptideGroupLabel(self) → bytes | str | String

Get the peptide group label

getRetentionTime(self) → float

Gets compound or peptide retention time

getRetentionTimeType(self) → int

Get compound or peptide retentiontime type

getRetentionTimeUnit(self) → int

Get compound or peptide retentiontime unit (minute/seconds)

hasCVTerm(self, accession: bytes | str | String) → bool

hasCharge(self) → bool

Whether product has set charge state

hasRetentionTime(self) → bool

Gets compound or peptide retention time

id

isMetaEmpty(self) → bool

Returns if the MetaInfo is empty

metaRegistry(self) → MetaInfoRegistry

Returns a reference to the MetaInfoRegistry

metaValueExists(self, in_0: bytes | str | String) → bool

Returns whether an entry with the given name exists

mods

protein_refs

removeMetaValue(self, in_0: bytes | str | String) → None

Removes the DataValue corresponding to name if it exists

replaceCVTerm(self, term: CVTerm) → None

Replaces the specified CV term

replaceCVTerms(self, cv_terms: List[CVTerm], accession: bytes | str | String) → None

rts

sequence

setCVTerms(self, terms: List[CVTerm]) → None

Sets the CV terms

setChargeState(self, charge: int) → None

Sets the peptide or compound charge states

setMetaValue(self, in_0: bytes | str | String, in_1: int | float | bytes | str | List[int] | List[float] | List[bytes]) → None

Sets the DataValue corresponding to a name

setPeptideGroupLabel(self, label: bytes | str | String) → None

Sets the peptide group label