IdXMLFile

class pyopenms.IdXMLFile

Bases: object

Cython implementation of _IdXMLFile

Original C++ documentation is available here

__init__(self) → None

Used to load and store idXML files

Methods

__init__(self)	Used to load and store idXML files
load
store

load()

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList) → None

Loads the identifications of an idXML file without identifier

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList) → None

Loads the identifications of an idXML file without identifier using PeptideIdentificationList

Overload:

load(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList, document_id: String) → None

Loads the identifications of an idXML file with identifier using PeptideIdentificationList

store()

Overload:

store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList, document_id: bytes | str | String) → None

Stores the data in an idXML file

Overload:

store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList) → None

Overload:

store(self, filename: bytes | str | String, protein_ids: List[ProteinIdentification], peptide_ids: PeptideIdentificationList, document_id: bytes | str | String) → None

Stores the data in an idXML file using PeptideIdentificationList