ChromatogramExtractor#
- class pyopenms.ChromatogramExtractor#
Bases:
object
Cython implementation of _ChromatogramExtractor
- Original C++ documentation is available here
– Inherits from [‘ProgressLogger’]
- __init__()#
Overload:
- __init__(self) None
Overload:
- __init__(self, in_0: ChromatogramExtractor) None
Methods
Overload:
endProgress
(self)Ends the progress display
extractChromatograms
(self, input, output, ...)getLogType
(self)Returns the type of progress log being used
nextProgress
(self)Increment progress by 1 (according to range begin-end)
__static_ChromatogramExtractor_prepare_coordinates(output_chromatograms: List[OSChromatogram] , extraction_coordinates: List[ExtractionCoordinates] , targeted: TargetedExperiment , rt_extraction_window: float , ms1: bool , ms1_isotopes: int ) -> None
setLogType
(self, in_0)Sets the progress log that should be used.
setProgress
(self, value)Sets the current progress
startProgress
(self, begin, end, label)- endProgress(self) None #
Ends the progress display
- extractChromatograms(self, input: SpectrumAccessOpenMS, output: List[OSChromatogram], extraction_coordinates: List[ExtractionCoordinates], mz_extraction_window: float, ppm: bool, im_extraction_window: float, filter: bytes | str | String) None #
- getLogType(self) int #
Returns the type of progress log being used
- nextProgress(self) None #
Increment progress by 1 (according to range begin-end)
- prepare_coordinates()#
__static_ChromatogramExtractor_prepare_coordinates(output_chromatograms: List[OSChromatogram] , extraction_coordinates: List[ExtractionCoordinates] , targeted: TargetedExperiment , rt_extraction_window: float , ms1: bool , ms1_isotopes: int ) -> None
- setLogType(self, in_0: int) None #
Sets the progress log that should be used. The default type is NONE!
- setProgress(self, value: int) None #
Sets the current progress