ProteinInference#
- class pyopenms.ProteinInference#
Bases:
object
Cython implementation of _ProteinInference
Original C++ documentation is available here
[experimental class] given a peptide quantitation, infer corresponding protein quantities
Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step
- __init__()#
Overload:
- __init__(self) None
Overload:
- __init__(self, in_0: ProteinInference) None
Methods
Overload:
infer
(self, consensus_map, reference_map)Given a peptide quantitation, infer corresponding protein quantities
- infer(self, consensus_map: ConsensusMap, reference_map: int) None #
Given a peptide quantitation, infer corresponding protein quantities
Infers protein ratios from peptide ratios (currently using unique peptides only). Use the IDMapper class to add protein and peptide information to a quantitative ConsensusMap prior to this step
- Parameters:
consensus_map – Peptide quantitation with ProteinIdentifications attached, where protein quantitation will be attached
reference_map – Index of (iTRAQ) reference channel within the consensus map