XTandemInfile#

class pyopenms.XTandemInfile#

Bases: object

Cython implementation of _XTandemInfile

Original C++ documentation is available here

__init__(self) None#

Methods

__init__(self)

getCleavageSite(self)

getDefaultParametersFilename(self)

getFragmentMassErrorUnit(self)

getFragmentMassTolerance(self)

getInputFilename(self)

getMaxPrecursorCharge(self)

getMaxValidEValue(self)

getModifications(self)

getNumberOfMissedCleavages(self)

getNumberOfThreads(self)

getOutputFilename(self)

getOutputResults(self)

getPrecursorErrorType(self)

getPrecursorMassErrorUnit(self)

getPrecursorMassToleranceMinus(self)

getPrecursorMassTolerancePlus(self)

getTaxon(self)

getTaxonomyFilename(self)

setAllowIsotopeError(self, allow_isotope_error)

setCleavageSite(self, cleavage_site)

setDefaultParametersFilename(self, filename)

setFragmentMassErrorUnit(self, unit)

setFragmentMassTolerance(self, tolerance)

setInputFilename(self, input_file)

setMaxPrecursorCharge(self, max_charge)

setMaxValidEValue(self, value)

setModifications(self, mods)

setNumberOfMissedCleavages(self, ...)

setNumberOfThreads(self, threads)

setOutputFilename(self, output)

setOutputResults(self, result)

setPrecursorErrorType(self, mono_isotopic)

setPrecursorMassErrorUnit(self, unit)

setPrecursorMassToleranceMinus(self, tol)

setPrecursorMassTolerancePlus(self, tol)

setSemiCleavage(self, semi_cleavage)

setTaxon(self, taxon)

setTaxonomyFilename(self, filename)

write(self, filename, ...)

ErrorUnit#

alias of __ErrorUnit

MassType#

alias of __MassType

getCleavageSite(self) bytes | str | String#
getDefaultParametersFilename(self) bytes | str | String#
getFragmentMassErrorUnit(self) int#
getFragmentMassTolerance(self) float#
getInputFilename(self) bytes | str | String#
getMaxPrecursorCharge(self) int#
getMaxValidEValue(self) float#
getModifications(self) ModificationDefinitionsSet#
getNumberOfMissedCleavages(self) int#
getNumberOfThreads(self) int#
getOutputFilename(self) bytes | str | String#
getOutputResults(self) bytes | str | String#
getPrecursorErrorType(self) int#
getPrecursorMassErrorUnit(self) int#
getPrecursorMassToleranceMinus(self) float#
getPrecursorMassTolerancePlus(self) float#
getTaxon(self) bytes | str | String#
getTaxonomyFilename(self) bytes | str | String#
setAllowIsotopeError(self, allow_isotope_error: bool) None#
setCleavageSite(self, cleavage_site: bytes | str | String) None#
setDefaultParametersFilename(self, filename: bytes | str | String) None#
setFragmentMassErrorUnit(self, unit: int) None#
setFragmentMassTolerance(self, tolerance: float) None#
setInputFilename(self, input_file: bytes | str | String) None#
setMaxPrecursorCharge(self, max_charge: int) None#
setMaxValidEValue(self, value: float) None#
setModifications(self, mods: ModificationDefinitionsSet) None#
setNumberOfMissedCleavages(self, missed_cleavages: int) None#
setNumberOfThreads(self, threads: int) None#
setOutputFilename(self, output: bytes | str | String) None#
setOutputResults(self, result: bytes | str | String) None#
setPrecursorErrorType(self, mono_isotopic: int) None#
setPrecursorMassErrorUnit(self, unit: int) None#
setPrecursorMassToleranceMinus(self, tol: float) None#
setPrecursorMassTolerancePlus(self, tol: float) None#
setSemiCleavage(self, semi_cleavage: bool) None#
setTaxon(self, taxon: bytes | str | String) None#
setTaxonomyFilename(self, filename: bytes | str | String) None#
write(self, filename: bytes | str | String, ignore_member_parameters: bool, force_default_mods: bool) None#