ResidueDB

class pyopenms.ResidueDB

Bases: object

Cython implementation of _ResidueDB

Original C++ documentation is available here

__init__(*args, **kwargs)

Methods

__init__(*args, **kwargs)
getModifiedResidue	Overload:
getNumberOfModifiedResidues(self)	Returns the number of modified residues stored
getNumberOfResidues(self)	Returns the number of residues stored
getResidue(self, name)	Returns a pointer to the residue with name, 3 letter code or 1 letter code name
getResidueSets(self)	Returns all residue sets that are registered which this instance
getResidues(self, residue_set)	Returns a set of all residues stored in this residue db
hasResidue(self, name)	Returns true if the db contains a residue with the given name

getModifiedResidue()

Overload:

getModifiedResidue(self, name: bytes | str | String) → Residue

Returns a pointer to a modified residue given a modification name

Overload:

getModifiedResidue(self, residue: Residue, name: bytes | str | String) → Residue

Returns a pointer to a modified residue given a residue and a modification name

getNumberOfModifiedResidues(self) → int

Returns the number of modified residues stored

getNumberOfResidues(self) → int

Returns the number of residues stored

getResidue(self, name: bytes | str | String) → Residue

Returns a pointer to the residue with name, 3 letter code or 1 letter code name

getResidueSets(self) → Set[bytes]

Returns all residue sets that are registered which this instance

getResidues(self, residue_set: bytes | str | String) → Set[Residue]

Returns a set of all residues stored in this residue db

hasResidue(self, name: bytes | str | String) → bool

Returns true if the db contains a residue with the given name