CVTerm_ControlledVocabulary

class pyopenms.CVTerm_ControlledVocabulary

Bases: object

Cython implementation of _CVTerm_ControlledVocabulary

Original C++ documentation is available here

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, rhs: CVTerm_ControlledVocabulary) → None

Methods

__init__	Overload:
getXRefTypeName(self, type)
isHigherBetterScore(self, term)
toXMLString	Overload:

Attributes

children
description
id
name
obsolete
parents
synonyms
units
unparsed
xref_binary
xref_type

children

description

getXRefTypeName(self, type: int) → bytes | str | String

id

isHigherBetterScore(self, term: CVTerm_ControlledVocabulary) → bool

name

obsolete

parents

synonyms

toXMLString()

Overload:

toXMLString(self, ref: bytes | str | String, value: bytes | str | String) → bytes | str | String

Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

Overload:

toXMLString(self, ref: bytes | str | String, value: int | float | bytes | str | List[int] | List[float] | List[bytes]) → bytes | str | String

Get mzidentml formatted string. i.e. a cvparam xml element, ref should be the name of the ControlledVocabulary (i.e. cv.name()) containing the CVTerm (e.g. PSI-MS for the psi-ms.obo - gets loaded in all cases like that??), value can be empty if not available

units

unparsed

xref_binary

xref_type