TransitionTSVFile

class pyopenms.TransitionTSVFile

Bases: object

Cython implementation of _TransitionTSVFile

Original C++ documentation is available here

– Inherits from [‘ProgressLogger’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: TransitionTSVFile) → None

Methods

__init__	Overload:
convertTSVToTargetedExperiment	Overload:
convertTargetedExperimentToTSV(self, ...)	Write out a targeted experiment (TraML structure) into a tsv file
endProgress(self)	Ends the progress display
getLogType(self)	Returns the type of progress log being used
nextProgress(self)	Increment progress by 1 (according to range begin-end)
setLogType(self, in_0)	Sets the progress log that should be used.
setProgress(self, value)	Sets the current progress
startProgress(self, begin, end, label)
validateTargetedExperiment(self, targeted_exp)	Validate a TargetedExperiment (check that all ids are unique)

convertTSVToTargetedExperiment()

Overload:

convertTSVToTargetedExperiment(self, filename: bytes, filetype: int, targeted_exp: TargetedExperiment) → None

Read in a tsv/mrm file and construct a targeted experiment (TraML structure)

Overload:

convertTSVToTargetedExperiment(self, filename: bytes, filetype: int, targeted_exp: LightTargetedExperiment) → None

Read in a tsv file and construct a targeted experiment (Light transition structure)

convertTargetedExperimentToTSV(self, filename: bytes, targeted_exp: TargetedExperiment) → None

Write out a targeted experiment (TraML structure) into a tsv file

endProgress(self) → None

Ends the progress display

getLogType(self) → int

Returns the type of progress log being used

nextProgress(self) → None

Increment progress by 1 (according to range begin-end)

setLogType(self, in_0: int) → None

Sets the progress log that should be used. The default type is NONE!

setProgress(self, value: int) → None

Sets the current progress

startProgress(self, begin: int, end: int, label: bytes | str | String) → None

validateTargetedExperiment(self, targeted_exp: TargetedExperiment) → None

Validate a TargetedExperiment (check that all ids are unique)