PeakIntegrator

class pyopenms.PeakIntegrator

Bases: object

Cython implementation of _PeakIntegrator

Original C++ documentation is available here

– Inherits from [‘DefaultParamHandler’]

__init__()

Overload:

__init__(self) → None

Overload:

__init__(self, in_0: PeakIntegrator) → None

Methods

__init__	Overload:
calculatePeakShapeMetrics	Overload:
estimateBackground	Overload:
getDefaultParameters(self, in_0)
getDefaults(self)	Returns the default parameters
getName(self)	Returns the name
getParameters(self)	Returns the parameters
getSubsections(self)
integratePeak	Overload:
setName(self, in_0)	Sets the name
setParameters(self, param)	Sets the parameters

calculatePeakShapeMetrics()

Overload:

calculatePeakShapeMetrics(self, chromatogram: MSChromatogram, left: float, right: float, peak_height: float, peak_apex_pos: float) → PI_PeakShapeMetrics

Overload:

calculatePeakShapeMetrics(self, spectrum: MSSpectrum, left: float, right: float, peak_height: float, peak_apex_pos: float) → PI_PeakShapeMetrics

estimateBackground()

Overload:

estimateBackground(self, chromatogram: MSChromatogram, left: float, right: float, peak_apex_pos: float) → PI_PeakBackground

Overload:

estimateBackground(self, spectrum: MSSpectrum, left: float, right: float, peak_apex_pos: float) → PI_PeakBackground

getDefaultParameters(self, in_0: Param) → None

getDefaults(self) → Param

Returns the default parameters

getName(self) → bytes | str | String

Returns the name

getParameters(self) → Param

Returns the parameters

getSubsections(self) → List[bytes]

integratePeak()

Overload:

integratePeak(self, chromatogram: MSChromatogram, left: float, right: float) → PI_PeakArea

Overload:

integratePeak(self, spectrum: MSSpectrum, left: float, right: float) → PI_PeakArea

setName(self, in_0: bytes | str | String) → None

Sets the name

setParameters(self, param: Param) → None

Sets the parameters