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pyopenms
AAIndex
AASeqWithMass
AASequence
AMSE_AdductInfo
AQS_featureConcentration
AQS_runConcentration
AScore
AbsoluteQuantitation
AbsoluteQuantitationMethod
AbsoluteQuantitationMethodFile
AbsoluteQuantitationStandards
AbsoluteQuantitationStandardsFile
AccurateMassSearchEngine
AccurateMassSearchResult
Acquisition
AcquisitionInfo
Adduct
AnnotatedMSRun
AnnotationState
AnnotationStatistics
AverageLinkage
BSpline2d
Base64
BaseFeature
BaseGroupFinder
BasicProteinInferenceAlgorithm
BayesianProteinInferenceAlgorithm
BedRModFile
BiGaussFitter1D
BiGaussModel
BilinearInterpolation
BinaryDataArray
BinnedSpectrum
Biosaur2Algorithm
BoundaryCondition
BrukerTimsFile
CV
CVMappingFile
CVMappingRule
CVMappingTerm
CVMappings
CVReference
CVTerm
CVTermList
CVTermListInterface
CachedMzMLHandler
CachedSwathFileConsumer
CachedmzML
CalibrationData
ChannelInfo
ChargePair
ChargedIndexSet
ChecksumType
Chromatogram
ChromatogramExtractor
ChromatogramExtractorAlgorithm
ChromatogramPeak
ChromatogramRangeManager
ChromatogramSettings
ChromatogramTools
ChromeleonFile
ClusterProxyKD
ClusteringGrid
CoarseIsotopePatternGenerator
ColumnHeader
CombinationsLogic
Compomer
Compound
ConfidenceScoring
Configuration
ConsensusFeature
ConsensusMap
ConsensusMapArrowIO
ConsensusMapNormalizerAlgorithmMedian
ConsensusMapNormalizerAlgorithmQuantile
ConsensusMapNormalizerAlgorithmRTLocal
ConsensusMapNormalizerAlgorithmThreshold
ConsensusXMLFile
Contact
ContactPerson
ControlledVocabulary
ConversionIssue
ConvexHull2D
CrossLinkSpectrumMatch
CrossLinksDB
CsvFile
CubicSpline2d
CvAccession
DBoundingBox2
DIAScoring
DRange1
DRange2
DRangeIntersection
DTA2DFile
DTAFile
DataFilter
DataFilters
DataProcessing
DataType
DataValue
Date
DateTime
DeconvolvedSpectrum
DecoyGenerator
DecoyTransitionType
DefaultParamHandler
Deisotoper
DeltaMassEntry
DeltaMassStatistics
DigestionEnzyme
DigestionEnzymeProtein
DigestionEnzymeRNA
DimensionDescription
DistanceMatrix
DocumentIdentifier
DriftTimeUnit
EDTAFile
Element
ElementDB
ElutionModelFitter
ElutionPeakDetection
EmgFitter1D
EmgGradientDescent
EmgModel
EmgScoring
EmpiricalFormula
EntrapmentEvaluation
EnzymaticDigestion
ExperimentalDesign
ExperimentalDesignFile
ExperimentalDesign_MSFileSectionEntry
ExperimentalDesign_SampleSection
ExperimentalSettings
ExtractedPeakMap
ExtractionCoordinates
FAIMSHelper
FASTAEntry
FASTAFile
FIAMSDataProcessor
FIAMSScheduler
FLASHDeconvAlgorithm
FLASHDeconvFeatureFile
FLASHDeconvSpectrumFile
FLASHHelperClasses
FalseDiscoveryRate
Feature
FeatureDeconvolution
FeatureDistance
FeatureFileOptions
FeatureFinderAlgorithmMetaboIdent
FeatureFinderAlgorithmPicked
FeatureFinderAlgorithmPickedHelperStructs_MassTrace
FeatureFinderIdentificationAlgorithm
FeatureFinderMetaboIdentCompound
FeatureFinderMultiplexAlgorithm
FeatureFindingMetabo
FeatureGroupingAlgorithm
FeatureGroupingAlgorithmKD
FeatureGroupingAlgorithmLabeled
FeatureGroupingAlgorithmQT
FeatureGroupingAlgorithmUnlabeled
FeatureHandle
FeatureMap
FeatureMapArrowIO
FeatureMapping
FeatureMapping_FeatureMappingInfo
FeatureMapping_FeatureToMs2Indices
FeatureOverlapFilter
FeatureUniqueIds
FeatureXMLFile
File
FileHandler
FileInfo
FileType
FileTypes
FineIsotopePatternGenerator
Fitter1D
FloatDataArray
FormulaTag
GNPSMGFFile
GNPSMetaValueFile
GNPSQuantificationFile
GaussFilter
GaussFitResult
GaussFitter
GaussTraceFitter
GlycanComposition
GlycanStructure
Gradient
GridBasedCluster
HPLC
HydrophobicityScaleMethod
HyperScore
IBSpectraFile
IDConflictResolverAlgorithm
IDDecoyProbability
IDFilter
IDFreeMassErrorEstimator
IDMapper
IDMapper_PeptideIdentificationListState
IDRipper
IDScoreSwitcherAlgorithm
IDSwitchResult
IDType
ILPDCWrapper
IMFormat
IMPeakType
IMSAlphabet
IMSDataConsumer
IMSElement
IMSIsotopeDistribution
IMSIsotopeDistribution_Peak
IMSWeights
IMTypes
ITRAQ_TYPES
IdXMLFile
IdentificationData
IdentifierMSRunMapper
ImzMLAuxArrayIndex
ImzMLDataType
ImzMLFile
ImzMLMeta
ImzMLSpectrumIndex
IncludeExcludeTarget
IndexedMzMLDecoder
IndexedMzMLFileLoader
IndexedMzMLHandler
InfoTag
InspectInfile
InspectOutfile
Instrument
InstrumentSettings
IntegerDataArray
InternalCalibration
InternalCalibration_LockMass
InterpolationModel
IonDetector
IonIdentityMolecularNetworking
IonImage
IonSource
IsobaricChannelExtractor
IsobaricChannelInformation
IsobaricIsotopeCorrector
IsobaricNormalizer
IsobaricQuantifier
IsobaricQuantifierStatistics
IsobaricQuantitationMethod
IsobaricQuantities
IsoelectricPoint
IsotopeCluster
IsotopeDistribution
IsotopeFitter1D
IsotopeLabelingMDVs
IsotopeModel
IsotopeReplacement
ItraqConstants
ItraqEightPlexQuantitationMethod
ItraqFourPlexQuantitationMethod
JavaInfo
Kernel_MassTrace
KroenikFile
Label
LabeledPairFinder
LabileModification
LevMarqFitter1D
LightCompound
LightMRMTransitionGroupCP
LightModification
LightProtein
LightTargetedExperiment
LightTransition
LinearInterpolation
LinearResamplerAlign
LogConfigHandler
LogMzPeak
LogType
LowessSmoothing
MRMAssay
MRMBatchFeatureSelector
MRMDecoy
MRMFP_ComponentGroupParams
MRMFP_ComponentParams
MRMFQC_ComponentGroupPairQCs
MRMFQC_ComponentGroupQCs
MRMFQC_ComponentQCs
MRMFeature
MRMFeatureFilter
MRMFeatureFinderScoring
MRMFeaturePicker
MRMFeaturePickerFile
MRMFeatureQC
MRMFeatureQCFile
MRMFeatureSelectorQMIP
MRMFeatureSelectorScore
MRMFile
MRMIonSeries
MRMMapping
MRMRTNormalizer
MRMScoring
MRMTransitionGroupCP
MRMTransitionGroupPicker
MS2File
MSChromatogram
MSDataAggregatingConsumer
MSDataCachedConsumer
MSDataSqlConsumer
MSDataStoringConsumer
MSExperiment
MSImagingExperiment
MSImagingGeometry
MSImagingRegion
MSNumpressCoder
MSPFile
MSPGenericFile
MSSpectrum
MSstatsFile
MT_QUANTMETHOD
MZTrafoModel
MZTrafoModel_MODELTYPE
MapAlignmentAlgorithmIdentification
MapAlignmentAlgorithmPoseClustering
MapAlignmentEvaluationAlgorithm
MapAlignmentEvaluationAlgorithmPrecision
MapAlignmentEvaluationAlgorithmRecall
MapAlignmentTransformer
MapConversion
MascotGenericFile
MascotXMLFile
MassAnalyzer
MassDecomposition
MassDecompositionAlgorithm
MassDelta
MassExplainer
MassFeature_FDHS
MassTrace
MassTraceDetection
MassTraces
MasstraceCorrelator
Math
MatrixDouble
Measure
MetaInfo
MetaInfoDescription
MetaInfoInterface
MetaInfoRegistry
MetaboTargetedAssay
MetaboTargetedAssay_CompoundTargetDecoyPair
MetaboTargetedTargetDecoy
MetaboTargetedTargetDecoy_MetaboTargetDecoyMassMapping
MetaboliteFeatureDeconvolution
MetaboliteSpectralMatching
Method
MobilityPeak1D
Mobilogram
Modification
ModificationDefinition
ModificationDefinitionsSet
ModificationPattern
ModificationSummary
ModificationsDB
ModifiedPeptideGenerator
ModifiedPeptideGenerator_MapToResidueType
ModifiedSincSmoother
MorpheusScore
MorpheusScore_Result
MorphologicalFilter
MsInspectFile
MultipleTesting
MultiplexDeltaMasses
MultiplexDeltaMassesGenerator
MultiplexDeltaMassesGenerator_Label
MultiplexDeltaMasses_DeltaMass
MultiplexIsotopicPeakPattern
MultiplexResolverAlgorithm
MzDataFile
MzIdentMLFile
MzMLFile
MzMLSpectrumDecoder
MzMLSqliteHandler
MzMLSwathFileConsumer
MzPAF
MzPAFAnnotation
MzPAFDeltaUnit
MzPAFErrorCode
MzPAFIonSeries
MzPAFMassDelta
MzPAFNeutralLoss
MzPAFPeakAnnotations
MzQCFile
MzTab
MzTabFile
MzTabM
MzTabMFile
MzXMLFile
NASequence
NLargest
NaNPolicy
NamedMod
NonNegativeLeastSquaresSolver
NoopMSDataWritingConsumer
NormalizationMethod
Normalizer
NucleicAcidSpectrumGenerator
NumpressConfig
OMSFile
OMSSACSVFile
OMSSAXMLFile
OPXLDataStructs
OPXLHelper
OPXLSpectrumProcessingAlgorithms
OSBinaryDataArray
OSChromatogram
OSChromatogramMeta
OSSpectrum
OSSpectrumMeta
OSWData
OSWHierarchy
OSWIndexTrace
OSWPeakGroup
OSWPeptidePrecursor
OSWProtein
OSWTransition
OSW_ChromExtractParams
OnDiscImzMLExperiment
OnDiscMSExperiment
OnDiscThermoRawExperiment
OpenMSBuildInfo
OpenMSOSInfo
OpenPepXLAlgorithm
OpenSearchAnalysisResult
OpenSearchModificationAnalysis
OpenSwathDataAccessHelper
OpenSwathHelper
OpenSwathOSWWriter
OpenSwathScoring
OpenSwath_Scores
OpenSwath_Scores_Usage
OriginAnnotationFormat
PEFFCustomKeyDef
PEFFDatabaseMetadata
PEFFDisulfideBond
PEFFEntry
PEFFFile
PEFFModification
PEFFProcessedRegion
PEFFVariantComplex
PEFFVariantSimple
PI_PeakArea
PI_PeakBackground
PI_PeakShapeMetrics
PScore
PTMEntry
PTMStatistics
Param
ParamCTDFile
ParamEntry
ParamNode
ParamValue
ParamXMLFile
ParquetFilter
ParquetWriteConfig
Peak1D
Peak2D
PeakBoundary
PeakFileOptions
PeakGroup
PeakIntegrator
PeakMap
PeakMapExtractor
PeakPickerChromatogram
PeakPickerHiRes
PeakPickerIM
PeakPickerIterative
PeakSpectrum
PeakTypeEstimator
PeakWidthEstimator
PepXMLFile
PepXMLFileMascot
Peptide
PeptideAndProteinQuant
PeptideAndProteinQuant_PeptideData
PeptideAndProteinQuant_ProteinData
PeptideAndProteinQuant_Statistics
PeptideEvidence
PeptideHit
PeptideHit_AnalysisResult
PeptideHit_PeakAnnotation
PeptideIdentification
PeptideIdentificationList
PeptideIndexing
PeptideProteinResolution
PeptideProteinResolution_ConnectedComponent
Peptidoform
PeptidoformIon
Percolator
PercolatorFeatureSetHelper
PercolatorInfile
PercolatorOutfile
PercolatorRescoring
Pi0Result
PipEchoAlgorithm
PlainMSDataWritingConsumer
PosteriorErrorProbabilityModel
PrecalAveragine
Precursor
PrecursorCorrection
PrecursorPurity
Prediction
PreprocessedPairSpectra
ProForma
ProSEAlgorithm
ProbablePhosphoSites
Product
ProgressLogger
ProtXMLFile
ProteaseDB
ProteaseDigestion
Protein
ProteinGroup
ProteinHit
ProteinIdentification
ProteinIdentificationArrowIO
ProteinProteinCrossLink
ProteinRunReferences
ProteomicsPkaScale
Publication
PurityScores
QPXFile
QTCluster
QTClusterFinder
QuotingMethod
RANSAC
RANSACParam
RANSACQuadratic
RNaseCleavageSensitiveModGroups
RNaseDB
RNaseDigestion
RNaseDigestionProduct
RangeBase
RangeIntensity
RangeMZ
RangeMobility
RangeRT
RankData
RankScaler
RansacModelLinear
RansacModelQuadratic
ReactionMonitoringTransition
RealMassDecomposer
RegularSwathFileConsumer
RequirementLevel
RescoreInput
RescoreOutput
Residue
ResidueDB
ResidueModification
RetentionTime
Ribonucleotide
RibonucleotideDB
RichPeak2D
RipFileContent
RipFileIdentifier
SIDE
Sample
SavitzkyGolayFilter
ScanWindow
ScoreSearchResult
Scores
SearchParameters
SearchResult
SeedListGenerator
SelectorParameters
SemanticValidator
SemanticValidator_CVTerm
SequenceCoverage
SequenceElement
SequestInfile
SequestOutfile
SignalToNoiseEstimatorMeanIterative
SignalToNoiseEstimatorMedian
SignalToNoiseEstimatorMedianChrom
SignalToNoiseEstimatorMedianRapid
SimpleOpenMSSpectraFactory
SimplePeak
SimpleSearchEngineAlgorithm
SimpleTSGXLMS
SiriusExportAlgorithm
SiriusFragmentAnnotation
SiriusFragmentAnnotation_SiriusTargetDecoySpectra
SiriusMSFile
SiriusMSFile_AccessionInfo
SiriusMSFile_CompoundInfo
Software
SourceFile
SpectraMerger
SpectraSTSimilarityScore
SpectralDeconvolution
SpectralMatch
Spectrum
SpectrumAccessOpenMS
SpectrumAccessOpenMSCached
SpectrumAccessOpenMSInMemory
SpectrumAccessSqMass
SpectrumAlignment
SpectrumAlignmentScore
SpectrumAnnotator
SpectrumHelper
SpectrumLookup
SpectrumMetaData
SpectrumMetaDataLookup
SpectrumNativeIDParser
SpectrumRangeManager
SpectrumRanges
SpectrumSettings
SplineInterpolatedPeaks
SplinePackage
SqMassConfig
SqMassFile
SqrtScaler
StablePairFinder
StringDataArray
SummaryStatistics
SwathFile
SwathMap
SwathMapMassCorrection
SwathWindowLoader
SysInfo
SystemSettings
TMTEighteenPlexQuantitationMethod
TMTElevenPlexQuantitationMethod
TMTSixPlexQuantitationMethod
TMTSixteenPlexQuantitationMethod
TMTTenPlexQuantitationMethod
TM_DataPoint
TSE_Match
Tagger
TargetedDataFileLoader
TargetedExperiment
TargetedExperiment_Instrument
TargetedExperiment_Interpretation
TargetedExperiment_Modification
TargetedSpectraExtractor
TempDir
TempFiles
TextFile
TheoreticalGlycanSpectrumGenerator
TheoreticalSpectrumGenerator
TheoreticalSpectrumGeneratorXLMS
ThermoRawFile
ThermoRawFileOptions
ThresholdMower
ToolInfo
TraMLFile
TraMLProduct
TransformationDescription
TransformationModelBSpline
TransformationModelInterpolated
TransformationModelLinear
TransformationModelLowess
TransformationModel_DataPoint
TransformationStatistics
TransformationXMLFile
TransitionListEvidenceFilter
TransitionListEvidenceFilter_PrecursorEvidence
TransitionListEvidenceFilter_Result
TransitionPQPFile
TransitionTSVFile
USI
UnimodXMLFile
UniqueIdGenerator
UniqueIdInterface
Unit
UnitType
UnlocalisedMod
UnresolvedIdentifications
ValueType
VersionDetails
VersionInfo
WindowMower
XFDRAlgorithm
XICParquetFile
XIMParquetFile
XIPMParquetFile
XLPrecursor
XMLFile
XQuestResultXMLFile
XQuestScores
XTandemInfile
XTandemXMLFile
pyopenms.Constants
pyopenms.plotting
API docs
pyopenms.Constants
pyopenms.Constants.EPSILON
pyopenms.Constants.EPSILON
#
pyopenms.Constants.
EPSILON
=
1e-06
#
EPSILON (used for comparisons)
On this page
EPSILON
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