pyopenms.update_scores_from_df

pyopenms.update_scores_from_df(peps: List[PeptideIdentification], df: DataFrame, main_score_name: str)

Updates the scores in PeptideIdentification objects using a pandas dataframe.

Parameters:

• peps – list of PeptideIdentification objects

• df – pandas dataframe obtained by converting peps to a dataframe. Minimum required: P_ID column and column with name passed by main_score_name

Returns:

the updated list of peptide identifications